Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0416
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 31 0.85
04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223... 30 2.0
11_01_0802 - 7115854-7116778,7117087-7117211,7118947-7119426,712... 29 2.6
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553... 29 4.5
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 28 6.0
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 28 6.0
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 28 7.9
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 28 7.9
04_03_1047 - 21978782-21978808,21979301-21980168,21980272-219803... 28 7.9
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -2
Query: 429 GTSAAETSRMYGTGVQKKARYVFGFNVFVLEISTFRTNPVDG 304
GT Y G+ + VF F VF+LEI T R PVDG
Sbjct: 234 GTFGCLAPEYYTHGIVDEKTDVFAFGVFLLEIMTGR-KPVDG 274
>04_04_0425 -
25121344-25121603,25121696-25121838,25122144-25122348,
25122453-25122590,25122999-25123185,25123519-25123852,
25123930-25124018,25124088-25124231,25124514-25124603
Length = 529
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 445 ARVLPWHQCCRNISNVRHWCPKEST 371
A +LPWH S++ HWC K T
Sbjct: 351 AALLPWHFTPTRASDLFHWCRKNKT 375
>11_01_0802 -
7115854-7116778,7117087-7117211,7118947-7119426,
7120005-7120222,7120351-7120441
Length = 612
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 280 ELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWKGKSKRQSKPPLKSLLVFLVK 110
EL A+ Q+ S +D GFGVS + + L + G ++KPP S+ + + K
Sbjct: 207 ELVALTVLVWVQTRSGMDVGFGVSAAAMAVGLVSLVAGVFFYRNKPPQGSIFMPIAK 263
>11_06_0356 -
22654329-22654571,22654695-22654898,22655065-22655319,
22655435-22655626,22655738-22656046,22656149-22656355,
22656450-22656527,22657493-22657747,22657850-22658000,
22658269-22658500,22658631-22658886,22658960-22659091
Length = 837
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 496 RRLLPHNGKHEILVYLRARVLPWHQCCRNISNVRHWCPKESTVCFWFQRF 347
R+L+PHNGK +L Y+ RVL + R ++ ++ ES+ W R+
Sbjct: 95 RKLVPHNGK-LVLAYMEERVLCFEYLQR--GSLDNYLSDESSGFDWCTRY 141
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 58 APLLSMHFCHLIGSSLIPLLKTPINSLKAVWIAFWIFLSRFA 183
AP+LS F + N L AVW+ +W+F+S +A
Sbjct: 187 APVLSGFFISFVSMEASAAALAAWN-LAAVWVQYWLFVSVYA 227
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = -1
Query: 304 PETKVENEELQAIV-EADPSQSTSEIDAGFGV--SDKTVLIHLKQIWKGKSKRQSKPPLK 134
PE + +++ A+V + D ST++ +G + + + ++L + K + R S +
Sbjct: 515 PEIRTGKDKIDAVVVDEDSVGSTNQHGSGAKILCGEGALDLYLDEHNKESTGRLSSKHVF 574
Query: 133 SLLVFLVKGSMNYL*DGKSA*ITTEHT 53
+L+ L + S ++L GKS T HT
Sbjct: 575 KVLIILCRKSPDHLEKGKSLKETGRHT 601
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 325 QNQPRGRPETKVENEELQAIVEADPSQSTSEIDAGFGVSDKT 200
QN G E +NE L +++EA T +D G G T
Sbjct: 87 QNVDEGPAEVAAKNEGLVSVIEASTEGGTLVLDDGSGFQAST 128
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 342 ERKR*NQKHTVLSFGHQCRTFEMFLQHW 425
E ++ N + +L+ GH+ F+M QHW
Sbjct: 317 EGRQSNARSVILTEGHETVEFKMHFQHW 344
>04_03_1047 -
21978782-21978808,21979301-21980168,21980272-21980399,
21981786-21982247,21982813-21982842,21983441-21983658,
21983777-21983894
Length = 616
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 280 ELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWKGKSKRQSKPPLKSL 128
EL A+ Q+ S +D GFG+S + L + G + ++KPP S+
Sbjct: 220 ELVALTALVWVQTHSGMDVGFGISAAAMAAGLVSLVSGAAFYRNKPPQGSI 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,705,898
Number of Sequences: 37544
Number of extensions: 399016
Number of successful extensions: 1076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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