Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0416
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    47   1e-05
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    38   0.005
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    38   0.005
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical ...    32   0.33 
Z82288-1|CAB05322.2|  479|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin compl...    27   9.4  
AC006674-3|AAF39932.2|  276|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = -1

Query: 376 STVCFWFQRFRS*NFDLQNQPR-GRPETKVENEELQAIVEADPSQSTSEIDAGFGVSDKT 200
           +T+ FWF++ +  N+DL ++PR GRP   ++ E++   +E DP   + EI A       T
Sbjct: 13  NTMKFWFEKIKKKNYDLDDKPRSGRPRLDID-EDISRALEDDPRSMSREISATLKRPHTT 71

Query: 199 VLIHLKQ 179
           ++ HL +
Sbjct: 72  IINHLHE 78



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = -3

Query: 161 QKAIQTAFKEFIG-----VFSKGINELPMRWQKCIDNNGAY 54
           +KA++T   +F        +++GI +LP+RWQ+ ID NG Y
Sbjct: 268 RKAVETWLDDFFASKSQEFYAEGIAQLPLRWQEVIDTNGEY 308


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 376 STVCFWFQRFRS*NFDLQNQPR-GRPETKVENEELQAIVEADPSQSTSEIDAGFGVSDKT 200
           +T   WFQ+F++ +F L+   R GRP  ++  E+L  +VE +P  S  E++        T
Sbjct: 19  NTAKSWFQKFKNGDFSLEEIERSGRP-VELNEEDLVKLVEEEPRLSLREMEEKLECCHST 77

Query: 199 VLIHLKQI 176
           +  HL ++
Sbjct: 78  IARHLGRL 85



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 119 FSKGINELPMRWQKCIDNNG 60
           FS+GI  LP +WQ+ +D NG
Sbjct: 290 FSRGIMMLPSKWQQVVDTNG 309


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 376 STVCFWFQRFRS*NFDLQNQPR-GRPETKVENEELQAIVEADPSQSTSEIDAGFGVSDKT 200
           +T   WFQ+F++ +F L+   R GRP  ++  E+L  +VE +P  S  E++        T
Sbjct: 44  NTAKSWFQKFKNGDFSLEEIERSGRP-VELNEEDLVKLVEEEPRLSLREMEEKLECCHST 102

Query: 199 VLIHLKQI 176
           +  HL ++
Sbjct: 103 IARHLGRL 110



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 119 FSKGINELPMRWQKCIDNN 63
           FS+GI  LP +WQ+ +D N
Sbjct: 315 FSRGIMMLPSKWQQVVDTN 333


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 119 FSKGINELPMRWQKCIDNNGAY 54
           FS+GI  LP +WQ+ +D NG Y
Sbjct: 315 FSRGIMMLPSKWQQVVDTNGEY 336


>AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical
           protein E04A4.2 protein.
          Length = 224

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 318 WF*RSKFQERKR*NQKHTVLSFGHQCRTFEMFLQHWCHGRTRARKYTNISCF 473
           WF +++ ++    N ++  +S     +   +FL+HW HG  +  +Y ++ CF
Sbjct: 85  WFFKAQPEDLLISNSRYLSISEDMNSKKVNLFLKHWIHGSNKRMEYFDV-CF 135


>Z82288-1|CAB05322.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK896.1 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 661 GPYI*NRHFVVLTTLI*NISSLVKNSKFKCIISFSWYI*VSKTVI 527
           GP I + H   L   I + +SLV + K+    S SWY  V   VI
Sbjct: 196 GPTIDSTHLGTLYQAIASNNSLVSSGKYLTFYSLSWYYSVRNIVI 240


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -1

Query: 286 NEELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWK--GKSKRQSKPPLKSLLVFLV 113
           ++++ +I++  P Q  SE+  GF ++ ++    ++   K  GK   +   PL++ + FL+
Sbjct: 620 SQQIGSILQTFPDQKWSEL-LGFIIAHESNATDIRLAAKCIGKRWLEQGKPLRACIAFLI 678

Query: 112 KGSMNYL 92
            G +++L
Sbjct: 679 AGDIDHL 685


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -1

Query: 286 NEELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWK--GKSKRQSKPPLKSLLVFLV 113
           ++++ +I++  P Q  SE+  GF ++ ++    ++   K  GK   +   PL++ + FL+
Sbjct: 620 SQQIGSILQTFPDQKWSEL-LGFIIAHESNATDIRLAAKCIGKRWLEQGKPLRACIAFLI 678

Query: 112 KGSMNYL 92
            G +++L
Sbjct: 679 AGDIDHL 685


>Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 179 NLERKIQKAIQTAFKEFIGVFSKGINELPMRWQKCIDNNGAYFA 48
           N  RK  +A++ A+++      K +NE PM   K +    + +A
Sbjct: 237 NASRKHLEAVEEAYRKTTNELCKDLNEYPMESDKDVKERASKYA 280


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 381 KKARYVFGFNVFVLEISTFRTNPVDGRRPKW 289
           K   + FGF + +  ++TF T PV    PKW
Sbjct: 155 KSCYHQFGFRIDLKCVTTFNTLPVRYGLPKW 185


>Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 179 NLERKIQKAIQTAFKEFIGVFSKGINELPMRWQKCIDNNGAYFA 48
           N  RK  +A++ A+++      K +NE PM   K +    + +A
Sbjct: 237 NASRKHLEAVEEAYRKTTNELCKDLNEYPMESDKDVKERASKYA 280


>U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin complex
           component protein2 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 411 TSRMYGTGVQKKARYVFGFNVFVLEIS 331
           TS  +   + KK R+ FG N +VLE++
Sbjct: 56  TSSDFSDSIAKKRRHAFGNNQYVLEVT 82


>AC006674-3|AAF39932.2|  276|Caenorhabditis elegans Hypothetical
           protein K12H6.2 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 136 LKAVWIA--FWIFLSRFASSGLIQ 201
           LK  WI+  FWIFL + AS+  IQ
Sbjct: 2   LKTTWISLIFWIFLPKIASTVAIQ 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,205
Number of Sequences: 27780
Number of extensions: 365453
Number of successful extensions: 1086
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)