Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0416
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 28 6.6
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 28 6.6
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 28 6.6
At2g19570.1 68415.m02286 cytidine deaminase (CDD) / cytidine ami... 28 6.6
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 27 8.8
At5g11290.1 68418.m01318 expressed protein contains Pfam profile... 27 8.8
At1g48110.1 68414.m05369 expressed protein contains Pfam profile... 27 8.8
At1g03270.1 68414.m00305 expressed protein contains Pfam profile... 27 8.8
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 295 KVENEELQAIVEADPSQSTSEIDAGFGVSDKT 200
KV E Q +V DPSQS + + G DKT
Sbjct: 176 KVSLEGSQKVVSVDPSQSIDTLSSVGGEKDKT 207
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Frame = +3
Query: 102 IDPFTKNTNKLFKGG-LDCLL---DFPFQICFKWINTVLSLTPKPASISEVLCDGSASTI 269
+DP + +L K G L C L P I + INT L P + + LC SA +
Sbjct: 149 LDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAV 208
Query: 270 AC---NSSFSTLVSGRP 311
C N L GRP
Sbjct: 209 GCSVVNIGTQDLAEGRP 225
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 104 NELPMR-WQKCIDNNGAYF 51
N+LP R W KC+ +NG +F
Sbjct: 174 NQLPFRYWSKCVFSNGMFF 192
>At2g19570.1 68415.m02286 cytidine deaminase (CDD) / cytidine
aminohydrolase identical to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700
Length = 301
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 304 AVHGVGSEGRNFKNENVETKNIP 372
AV G+GS GR F NVE N+P
Sbjct: 49 AVVGLGSSGRIFLGVNVEFPNLP 71
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 211 SDKTVLIHLKQIWKGKSKRQSKPPLKSLLVFLVKGSMN 98
+D VL+HLK R+++ PL + V V GSM+
Sbjct: 179 ADFAVLVHLKAEGVSDDARRARAPLDLITVLDVSGSMD 216
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +3
Query: 102 IDPFTKNTNKLFKGG-LDCLL---DFPFQICFKWINTVLSLTPKPASISEVLCDGSASTI 269
+DP + + +L K G L C L P I + INT L P + + LC SA +
Sbjct: 150 LDPDSNDLYELVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAV 209
Query: 270 AC---NSSFSTLVSGRP 311
C N L GRP
Sbjct: 210 GCSVVNIGTQDLAEGRP 226
>At5g11290.1 68418.m01318 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 353
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 103 LIPLLKTPINSLKAVWIAFWIFLSRFASSGLIQFYHLPRSLHLSL 237
L PL + N K W++ F + S + F L RS+HL L
Sbjct: 120 LPPLTRIIHNHFKKFWMSIPSFSRSISDSKICHFVDLLRSIHLPL 164
>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 639
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 331 DLQNQPRGRPETKVENEELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWKGKSKRQ 152
+L ++ G ET V+ + S+ ID S+ T + HL Q + KSK
Sbjct: 532 ELPSKSEGNEETTVKEGNEEDTSSTQKKISSLTIDPSGTDSNPTTVSHLNQKSQAKSKPN 591
Query: 151 SKPPLK 134
S LK
Sbjct: 592 SSGSLK 597
>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 499
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 316 VGSEGRNFKNENVETKNIPCFLLD 387
V + GRNF+ T+++PC L D
Sbjct: 381 VKNRGRNFQQNGTVTRDLPCLLED 404
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,808
Number of Sequences: 28952
Number of extensions: 337635
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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