Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0415
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.2  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.9  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   6.9  

>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 160 RKEHKKNTVLTSDLQFCTLILKKKLIRNRCHLCILVTCTC 279
           +KE KK T++  +    +  L KK+   R   C+LV C C
Sbjct: 95  KKEKKKETIVEKNKVLKSFALYKKINNYRSTRCVLV-CQC 133


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 304 GIYSSFCGDTCMLLKCINGTYFGSIFSSKLMYKIASHWL 188
           GIY SF     M  K I   Y G  FSS  +  +A  ++
Sbjct: 14  GIYGSFLSWAVMQEKIITRPYDGERFSSPALLSLAQSFM 52


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   TGNFSNRSNIVTIYLISFFLLITIK 80
           T NFS  SN+ TI L+   LL  ++
Sbjct: 94  TSNFSAHSNLATINLVGNILLAVVR 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,299
Number of Sequences: 5004
Number of extensions: 55544
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)