Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0414
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 74 2e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 62 1e-10
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 36 0.005
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.3
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 7.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 7.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 7.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 7.1
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 9.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.4
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 74.1 bits (174), Expect = 2e-14
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = -1
Query: 682 DVLRDGVILCKLANKLAPGSVKKIQEKGTNFQLMENIQRF-QAAIKKYGVPEEEIFQTAD 506
D L+ GVILC++ K A G+ + +E F MENI F A + VP +++FQT+D
Sbjct: 29 DQLQSGVILCRIC-KEALGANIRYKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSD 87
Query: 505 LFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELN-LQ 329
LFERRN QV +++ R K LGPK+A+K R F+ +Q R +N LQ
Sbjct: 88 LFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQ 147
Query: 328 MG 323
G
Sbjct: 148 YG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = -1
Query: 718 CLGEPL-PNGAYEDVLRDGVILCKLANKLAPGSVKKI-QEKGTNFQLMENIQRFQAAIKK 545
CLG L P +E LR+GV+L L K P + KI F+ +NI +F I
Sbjct: 54 CLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG 113
Query: 544 YGVPEEEIFQTADLFERRNIPQVTLCLYAL 455
G+PE F+ D++E +N+P+V C++AL
Sbjct: 114 IGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 36.3 bits (80), Expect = 0.005
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -1
Query: 688 YEDVLRDGVILCKLANKLAPGSVKKIQEKGTNFQLMEN----IQRFQAAIKKYGVPEEEI 521
+ D L +G +LC+LA K P K +Q+ E + F + G+
Sbjct: 88 FVDALVNGKVLCQLAFKYYP---KLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPFR 144
Query: 520 FQTADLFERRNIPQVTLCLYAL 455
F+T DL R NIP+V CL+AL
Sbjct: 145 FETKDLVRRFNIPKVIYCLHAL 166
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 631 EPICWPICKGSHRPLAH 681
+PIC+P K SH PL H
Sbjct: 360 DPICFPWKKASHMPLEH 376
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 579 SMSWKLVPFSWIFFTDPGANLLANLQRITPSLSTSSYAPFG 701
S+++KL DP LAN +++ SLS +Y P G
Sbjct: 33 SLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIG 73
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 716 TSEIQVRTSCSWSLFLAGILCRRNLV 793
T I V+TSCSW L LC +N++
Sbjct: 638 TKFISVQTSCSWITGLTLRLCFQNVL 663
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -1
Query: 439 KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGF 284
+ F G G + + + R R N G++ G S SG+GGF
Sbjct: 565 RESSFGGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGGF 616
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 330 KWASIRAPPSPVMVASVTPATCKLLLNFSQYF 235
++ IR+PP+ V + S+TP NF Q +
Sbjct: 46 RYTKIRSPPTRVSIESITPKQRFPAPNFEQAY 77
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 238 FSTLISVFVHGRIWLNDFFTF 176
FST I VHG WL D + F
Sbjct: 140 FSTPIPHMVHGIPWLQDLYIF 160
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 468 HNVTWGMLRLSKRSAVWN 521
HN WG R + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,718
Number of Sequences: 5004
Number of extensions: 80962
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -