Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0413
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_19484| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  

>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 221 KINVQNCKSLVRTVFFLCSFLTTWTQQH 138
           KI   NCK  +  ++ +CSFL TW  +H
Sbjct: 111 KIKKMNCKR-IEVLYVICSFLGTWVVKH 137


>SB_19484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 245 LFRINFFFKINVQNCKSLVRTVFFLCSFLT 156
           +  +NF+++ + + C ++V  VF++  FLT
Sbjct: 39  MLALNFYWRWDTEECSTMVPRVFYIAQFLT 68


>SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 245 LFRINFFFKINVQNCKSLVRTVFFLCSFLT 156
           +  +NF+++ + + C ++V  VF++  FLT
Sbjct: 269 MLALNFYWRWDTEECSTMVPRVFYIAQFLT 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,882,202
Number of Sequences: 59808
Number of extensions: 357172
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)