Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0412
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   6.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.6  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 345 YTLKSDQIKLSLKKYFEATLSRMNSS 268
           Y  KS+   L  KKY + TL R+N S
Sbjct: 333 YKEKSENDILKFKKYVQQTLKRLNRS 358


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 61  TFLPDLLSGSRFRSSVRFCEALLL 132
           T  PD++S SRF S V  C A L+
Sbjct: 900 TLPPDIISDSRFSSRVYACTANLI 923


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 173 RGLKPDEVANTGPSKSSASQNL-TLDRKREPLRRSGKKVSGLCL 45
           RG+ P + A TG  K S+ Q + T+  + + L++ G KVS L +
Sbjct: 51  RGV-PHDHAKTGSRKPSSGQLIATMQNEIDRLKKEGDKVSILLM 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,341
Number of Sequences: 5004
Number of extensions: 47867
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)