Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0412
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami...    28   5.7  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   7.6  
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote...    27   10.0 

>At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 207

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 300 NIFLVIVLFGRFLKYIFHFHMA 365
           N+ L  ++FG F+ +IFHFH++
Sbjct: 183 NLVLACMVFGFFISWIFHFHVS 204


>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, EMBL:EH058
          Length = 888

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 125 SASQNLTLDRKREPLRRSGKKVSGLCLWVNNSL 27
           S S N T       ++ + K V GLCLW NNS+
Sbjct: 189 SCSANSTWPLSLGQIQTAVKCVQGLCLWRNNSV 221


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  RKSVGCVYGLIIHSSSPSSQA 5
           RK++ CVYG  I S  PSS A
Sbjct: 197 RKTIDCVYGAFICSRCPSSYA 217


>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21, Oryza sativa,
           PIR:A57676
          Length = 1031

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 98  RKREPLRRSGKKVSGLCLWVNNSLVKPFIAS 6
           RKR+PL    K VSG+C+ + + L+   +AS
Sbjct: 639 RKRKPLSVRKKVVSGICIGIASLLLIIIVAS 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,750
Number of Sequences: 28952
Number of extensions: 235524
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)