Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0410
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44200.1 68415.m05500 expressed protein                             36   0.025
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea...    35   0.058
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    33   0.31 
At2g27900.1 68415.m03382 expressed protein                             33   0.31 
At5g64910.1 68418.m08165 expressed protein  ; expression support...    30   1.6  
At5g22120.1 68418.m02575 expressed protein                             30   2.2  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    29   2.9  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    29   2.9  
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    29   2.9  
At2g38770.1 68415.m04760 expressed protein                             29   3.8  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    29   5.0  
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain...    28   8.7  

>At2g44200.1 68415.m05500 expressed protein
          Length = 493

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 26/76 (34%), Positives = 37/76 (48%)
 Frame = +2

Query: 314 EQETLNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 493
           E+E L +    D  ++ + L   +P   + R+  G    + EERAARL +M     Q  A
Sbjct: 363 ERENLKSYGQEDKKRKAEDLDSGKPNEYQNRRRKGGSKLSEEERAARLKQM-----QMDA 417

Query: 494 NESPEQRATRLKRMSE 541
               EQR TRLK+  E
Sbjct: 418 EVHEEQRWTRLKKADE 433


>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400); BING4
           (gi:3811380) {Mus musculus]; similar to hypothetical
           protein GB:P40055 [Saccharomyces cerevisiae]
          Length = 536

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 31/112 (27%), Positives = 49/112 (43%)
 Frame = +2

Query: 326 LNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESP 505
           L+ + P  ++ +   +  + P +RR+ K S  + E  +E A   AK +    +      P
Sbjct: 427 LDKLPPETIMLDPSKIGAMRP-SRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTKGRNKP 485

Query: 506 EQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQAR 661
            +R  + K M E A KR   E     AI+  R+   AA  L   T  +R AR
Sbjct: 486 SKRTKKKKEMVENA-KRTFPEQEHNTAIKKRRIVEDAAAEL--PTSLKRFAR 534


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
 Frame = +2

Query: 167 KKMVIAKTNNE-WKSSVGEDANAASNTTHFRLSDECIQYDNXXXXXXXXDEQETLNTVEP 343
           K  + +KT  + +  S GE      +T++   + E    D           Q+T N  + 
Sbjct: 240 KSELDSKTGEKGFSDSNGELPETNLSTSNATETTESSGSDESGSSGKSTGYQQTKNEEDE 299

Query: 344 VDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATR 523
            + +Q  +  S ++   +  +  S  + E+ EE+  R  K  + +      E PE+R  +
Sbjct: 300 KEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKR-EK 358

Query: 524 LKRMSEYAAKRLSSETREQRA 586
               S+  +K    E +E+ A
Sbjct: 359 EDSSSQEESKEEEPENKEKEA 379


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +2

Query: 137 GDLSQADSSWKKMVIAKTNNEWKSSVGEDANAASNTTHFRLSDECIQ 277
           G   +  S + + VI++T++  KS VGED +AA+  +    SD C+Q
Sbjct: 345 GLAEKIQSFFMQEVISETHSVLKSIVGEDNSAATQYSRLTYSDLCLQ 391


>At5g64910.1 68418.m08165 expressed protein  ; expression supported
           by MPSS
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 311 DEQETLNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRL 490
           +E+E +   E     +E    S  EP+ RR ++  G K+E  ++ +   AK  A   +  
Sbjct: 114 EEEEAVKPDESASQKEEAKGASSSEPQLRRGKRKRGTKTEAEKKVSTPRAKKRAKTTKAQ 173

Query: 491 ANESPE 508
           A+E PE
Sbjct: 174 ASE-PE 178


>At5g22120.1 68418.m02575 expressed protein
          Length = 383

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +2

Query: 206 SSVGEDANAASNTTHFRLSDECIQYDNXXXXXXXXDEQETLNTVEP-----VDMIQEMDP 370
           S +  D N +S     +  D  +   N        D+ E L  VEP     V+ + E+  
Sbjct: 120 SGLKSDPNVSSFDADGKTEDSKVSSSNSAAHDSSDDDWEALADVEPSKLLPVEELPEISK 179

Query: 371 LSLLEPKAR-RRRKGSG 418
           LS+ EPK +  +R+G G
Sbjct: 180 LSVEEPKVQGPKRRGRG 196


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +2

Query: 365 DPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEY 544
           DP +L +   ++  +    K    EER   LA++   A+   A +  +  A  LK +   
Sbjct: 532 DPAALKQHFGKKIAEVEDEKRSVQEERNRLLAEIENLASDGQAQKLQDVHAQNLKALEAQ 591

Query: 545 AAKRLSSETREQRAIRLARMSAYAARRLANE 637
                  +  + + ++  + S  AARRL +E
Sbjct: 592 ILDLKKKQESQVQLLKQKQKSDDAARRLQDE 622


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +2

Query: 365 DPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEY 544
           DP +L +   ++  +    K    EER   LA++   A+   A +  +  A  LK +   
Sbjct: 532 DPAALKQHFGKKIAEVEDEKRSVQEERNRLLAEIENLASDGQAQKLQDVHAQNLKALEAQ 591

Query: 545 AAKRLSSETREQRAIRLARMSAYAARRLANE 637
                  +  + + ++  + S  AARRL +E
Sbjct: 592 ILDLKKKQESQVQLLKQKQKSDDAARRLQDE 622


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 335 VEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAK 463
           V+ VD++Q   P+    PK R+R++G   ++   ++R   ++K
Sbjct: 120 VQFVDLLQNRGPVKKKTPKGRKRKRGKYSRTVAPKKRNGSVSK 162


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 590  RLARMSAYAARRLANETPAQRQARLL---EDVGICCEKAG 700
            R  R++A   RRL   +  +R AR L   EDVG  CE AG
Sbjct: 958  RQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAG 997


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 374 SLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESP 505
           SLL P     R+    K  +  ER + LAK +  AAQ L ++ P
Sbjct: 535 SLLLPGGSPAREAESSKEGSRRERLSMLAKRAVQAAQVLQHKKP 578


>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 601

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 389 KARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATR 523
           + ++  +GSGP+ +T EER  +L  +      +L  E  E    R
Sbjct: 512 RKKKMEQGSGPRLQTMEERLQKLKLLFVDLESQLQKEKVEALVAR 556


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,218,633
Number of Sequences: 28952
Number of extensions: 312515
Number of successful extensions: 851
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)