Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0408
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   1.2  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.9  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   8.6  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 206 NSYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHE 72
           N +G   D +K  ++   C T+   H+  G  +    +D E THE
Sbjct: 219 NKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHENTHE 263


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 486 LQDGSCECPKLYHRRRSNKHALVRDCTAATTDAS-HS 379
           L++G   C +LY R   +  A  R C +   D S HS
Sbjct: 295 LEEGKSVCLRLYQRNNGSILAFPRSCRSFALDGSFHS 331


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 86  ERTHETNVPSTSERT*TYAREKTMNLSV 3
           ER  E+++P+ +++   Y ++KT NLS+
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSM 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,846
Number of Sequences: 5004
Number of extensions: 43274
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)