Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0406
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 28 1.7
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 27 3.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 3.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 3.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 3.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.9
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 25 9.1
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 606 VLEIRIASTHSSWRGRGLMRVLCEETERLAKAMGAGALR 722
VL+I+ + ++++GRG+ R+L +E L + G A R
Sbjct: 143 VLKIKRQTNPAAFKGRGVFRILADEKFALYRGWGWTAAR 181
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 531 RILKVLGHLDREARIWDKLPETCDSVLE 614
R + + G +D+ R+WD TC VLE
Sbjct: 559 RNICISGSMDKSIRVWDLSTGTCKYVLE 586
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 207 PSSKAAPAVRLRECIFPPWHFPA 139
PSS +P +R CIFP + P+
Sbjct: 133 PSSSTSPGIRAGFCIFPSLNIPS 155
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 227 HFARPDLQARKLRRQFVSESVFFHPGIFPL 138
HF++P+LQ R + + V ES P +PL
Sbjct: 242 HFSQPELQNRNVHLETVPESYPVPPSGYPL 271
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 40 TLKFYARKVTDLFPIWLLQV 99
T K Y R++T++ P WLL++
Sbjct: 1014 TTKEYCRQITEIQPEWLLEI 1033
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 255 ASVWCKLERTFCEAGSPSSKAAPAVRLRECIFPPWHFPAQNGPS 124
ASVW ++ER G S + ++ L P + A N PS
Sbjct: 611 ASVWNRIERAAAHDGPSLSAPSSSINLANITSRPTNSSAANTPS 654
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 5.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 TRSHEGTRESRTHP*ILRAKSDRSFSNMAVTSTRGI---VNLKEKGHFERENARVEKYTL 173
T SH E + P S +N A+ S + V +E+ARV++
Sbjct: 417 TTSHNKVPERNSVPAYNEKLMHSSAANAAILSHKNYSPPVQPTRDDEVSQEDARVKEIVR 476
Query: 174 GDELP---AQLSSLEIRPRKMSVPAYTIQR 254
G +LP + LS+ RP + PA T++R
Sbjct: 477 GMKLPLTSSSLSAAAYRPMEKQDPA-TVER 505
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 486 DYTDKSEDCPNPK-FRRILKVLG--HLDREAR 572
DYT K D NPK +R K +G H +RE++
Sbjct: 1959 DYTSKELDLNNPKTYRNFCKPMGAQHPERESQ 1990
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 198 KAAPAVRLRECIFPPWHFPA-QNGPSPSN 115
++APA+ + PPW P Q+ PSN
Sbjct: 448 QSAPALSMNPSSLPPWQQPTQQSAVQPSN 476
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 489 YTDKSEDCPNPKFRRILKVLGHLDREARIWDKLPE 593
YTD + + NP+ + ++L LD + + DK E
Sbjct: 266 YTDSAAEPSNPELEGVRELLSTLDAKKSLTDKALE 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,177
Number of Sequences: 5004
Number of extensions: 65679
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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