Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0406
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0657 - 19749835-19751942,19753123-19753561 31 1.0
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 30 2.3
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 29 3.1
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 29 4.1
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 28 7.2
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 7.2
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 28 7.2
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 7.2
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 9.5
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 28 9.5
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 378 DYAAATLSDGFSVAAVDENGDYVG--VIINGIVRREEVDYTDKSEDCPNPKFR 530
D + TLS+ A ++E G + G V + G RRE V Y K E CP+ + R
Sbjct: 45 DNSTVTLSE----ATMEELGIFRGDLVTLRGRRRREAVCYAQKDESCPDGRLR 93
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 23 AGEPNAPLNFTRE--K*QIFFQYGCYKYKRHCEFEGEG 130
AG+P A L+ E K Q++ Y YK C+F G+G
Sbjct: 508 AGKPVAALDILNEMAKKQLYITPQIYNYKSSCKFAGDG 545
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 154 GWKNTLSETNCRRSFRAWRSGLAKCPFQLTP 246
G ++L+ T RR F AWR + CP ++ P
Sbjct: 14 GGASSLARTRRRRLFPAWRRWIRHCPRRIRP 44
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 507 DCPNPKFRRILKVLGHLDREARIWDKLPETCDSVLEIRIASTHS 638
D PN + +R L+ +D EA +LP ++VLE ++A HS
Sbjct: 50 DVPNKELKRRLETYYGVDDEA----ELPSVTEAVLERKLADVHS 89
>12_02_0272 - 16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 351 PESRCTELDDYAAATLSDGFSVAAVDENGDYVGVIINGIVRREEVDYTDKSEDCP 515
P+ + +LDD + L +G + ++G + I + R EEV T S P
Sbjct: 869 PQLQILKLDDKKPSNLEEGHGTSGAAQHGKTPLIGIEHLPRLEEVQVTSHSSKVP 923
>12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 513 PNPKFRRILKVLGHLDREARIWDKLPETCDSVLEIRIASTHSSWRGRGLMRVLCE 677
P P+ R L++ GH+DR W E+ ++E+++ TH G L VLC+
Sbjct: 856 PPPQLLRYLRICGHMDR-LPDW---VESLHDLVELQLRWTHVD--GFQLFNVLCK 904
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 543 VLGHLDREARIWDKLPETCDSVL 611
+ G LD+ ARIWD TC +L
Sbjct: 581 ITGSLDKTARIWDCKSRTCVQIL 603
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 369 ELDDYAAATLSDGFSV--AAVDENGDYVGVI-INGIVRREEVDYTDKSEDCPNPKFRRIL 539
EL + + + DGFS+ + +DE+G+ + + ++ E+D D + PN K RR+
Sbjct: 1186 ELQLDSDSDILDGFSINSSTIDESGEKSIIKKFSVLLTLSEMDLVDMAVHFPNRKMRRLH 1245
Query: 540 KVLGH 554
+ H
Sbjct: 1246 EFCSH 1250
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 646 RQDECVDAILISRTESQVSGSLSQMRASRSK*PSTFR 536
+ D D +++TESQV+G ++ + +S PS+++
Sbjct: 914 KSDGSTDEASVNKTESQVTGDMNNESSGKSINPSSYQ 950
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 402 DGFSVAAVDENGDYVGVIINGIVRREEVDYTDKSED 509
DG +VAA+D VG +I G R E +DY + D
Sbjct: 460 DGKTVAAMDLLVPRVGELIGGSQREERLDYLEARLD 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,704,663
Number of Sequences: 37544
Number of extensions: 479996
Number of successful extensions: 1533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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