Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0406
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)                 29   4.2  
SB_52499| Best HMM Match : COX5A (HMM E-Value=0)                       29   5.5  
SB_40875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 28   7.3  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_30170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 54  RAKSDRSFSNMAVTSTRGIVNLKEKGHFERENARVEKYTLG---DELPAQLSSLEIRP 218
           R + DRS  N      R +VN + +     +N R + + L    D +PA++S+ E++P
Sbjct: 41  RTQYDRSLVNNRAQYDRSLVNNRAQYDHVLDNNRAQYHNLTDLVDVIPAEVSTQEVKP 98


>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
          Length = 1092

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 609 EQSHKSPAVCPRCELRGPSD 550
           + SHKSP  C  C++RG S+
Sbjct: 30  QMSHKSPTNCTTCQMRGGSE 49


>SB_52499| Best HMM Match : COX5A (HMM E-Value=0)
          Length = 208

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 266 VVREPLYGVSWNGHFARPDLQARKLRR 186
           V  E  +   W  +F+RPD+ A +LRR
Sbjct: 105 VESEEAFDARWEAYFSRPDIDAWELRR 131


>SB_40875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 609 EQSHKSPAVCPRCELRGPS 553
           + SHKSP  C  C +R PS
Sbjct: 28  QMSHKSPTNCTTCRMRSPS 46


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 459  NGIVRREEVDYTDKSEDCPNPKFRRILKVLGH 554
            NGI+R  EV  TDKS D     FRR   + GH
Sbjct: 1737 NGILRAHEV-CTDKSADAFIMAFRRFASLRGH 1767


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 VDENGDYVGVIINGIVRREEVDYTDKSE 506
           VD NGD  GVI+NG+ + ++ D  D  +
Sbjct: 23  VDGNGDGDGVILNGVSQSDDDDDDDDDQ 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,431,651
Number of Sequences: 59808
Number of extensions: 517638
Number of successful extensions: 1473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)