Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0406
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15380.1 68418.m01799 cytosine methyltransferase, putative si...    29   4.5  
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea...    29   4.5  
At3g55350.1 68416.m06147 expressed protein                             29   4.5  
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c...    28   6.0  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    28   6.0  
At1g52700.1 68414.m05952 phospholipase/carboxylesterase family p...    28   6.0  
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa...    28   7.9  
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea...    28   7.9  

>At5g15380.1 68418.m01799 cytosine methyltransferase, putative
           similar to cytosine methyltransferase [Arabidopsis
           thaliana] GI:7658293; contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 624

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 345 ETPESRCTELDDYAAATLSDGFSVAAVDENGDY-VGVIINGIVRREEVDYTDKSED 509
           E   S+   ++ + A    +   + A+ E+GD  VG I N ++   EVD   +SED
Sbjct: 105 EASSSKSKVINHFIAMGFPEEHVIKAMQEHGDEDVGEITNALLTYAEVDKLRESED 160


>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
           family protein similar to Will die slowly protein
           (SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 549 GHLDREARIWDKLPETCDSVLEIR 620
           G LDR  R+WD     C  +L +R
Sbjct: 132 GSLDRSVRLWDLRVNACQGILHLR 155


>At3g55350.1 68416.m06147 expressed protein
          Length = 406

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 KMPGWKNTLSETNCRRSFRAWRSGLAKCPFQLTPYRGSRTTI 270
           ++ G K  LSE    R +    SG    P+ LTPY+G  T++
Sbjct: 258 RLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSL 299


>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 487

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 432 NGDYVGVIINGIVRREEVDYTDKSEDCPNPKFRRILKVLGHLD 560
           NG+   V+ +GI   +E+ +TD S    + KFR  ++++   D
Sbjct: 138 NGNVFAVLNDGIGVMDEISFTDNSSWTRSRKFRLGVRIVDQFD 180


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 316 SSRKKNLLRNFSTRSRSLYVSLCMV*AGTDILRGRISKLESCAGSSSPRVYFSTLAFS 143
           S+  K LL +F++R+ S       + AG      R++ L  C G  SP V  + +AFS
Sbjct: 643 STNLKTLLSSFASRNASYSTGFQNIRAGQT--PDRVTGLFLCRGDLSPEVCSNCVAFS 698


>At1g52700.1 68414.m05952 phospholipase/carboxylesterase family
           protein similar to lysophospholipase I [Mus musculus]
           GI:1864159; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 255

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +1

Query: 136 LSGKMPGWKNTLSETNCRRSFRAWRSGLAKCPFQLT 243
           LSG +PGWK+  S+  C  SF A R   A  P  LT
Sbjct: 161 LSGWLPGWKSLRSKIEC--SFEAARRA-ASLPIILT 193


>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 407

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 149 CQGGKIHSRRRTAGAAFELGDPASQNVRSSLHHTEAHVQR 268
           C GG I     ++ AA EL  PAS  VRS  ++  + ++R
Sbjct: 46  CDGGFIEQINDSSSAATELTIPASTEVRSINNNRRSVIRR 85


>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
           discoideum]
          Length = 515

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 387 AATLSDGFSVAAVDENGDYVGVIINGIVRREEVDYTDKSEDCPNPKFRRILKVLGHLDRE 566
           A T  +   +AA   N  +V  + +G VR     +TDK       KF     V    DR 
Sbjct: 280 AVTHDNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRT 339

Query: 567 ARIWD 581
            ++WD
Sbjct: 340 IKLWD 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,370
Number of Sequences: 28952
Number of extensions: 366093
Number of successful extensions: 1149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)