Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0405
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   9.5  

>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 738 SPMDFSNVKGRAKPLPAGL 682
           SP D  NV+ RAK +P+G+
Sbjct: 216 SPSDGQNVRSRAKKIPSGM 234


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 578 IY*PSFFNTNCLYLTNHTINP 516
           +Y PS+ NTN LY  ++  NP
Sbjct: 133 LYSPSYNNTNLLYNFSYNANP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,532
Number of Sequences: 5004
Number of extensions: 65609
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)