Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0405
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436...    32   0.61 
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     29   5.7  

>03_01_0591 -
           4366400-4366558,4366782-4366985,4367078-4367152,
           4367240-4367394,4367476-4367596,4367720-4367794,
           4369435-4369572,4369655-4369765,4369844-4369948,
           4370327-4370405,4370561-4370622,4370698-4370763,
           4370840-4371024,4371095-4371173
          Length = 537

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 339 FGKKINCSLFACLSEVLTTQN-GFIRKTRD 425
           FG+ I C LF C SE LTTQ   F++  RD
Sbjct: 483 FGQIIRCYLFTCNSEFLTTQVWSFVKGCRD 512


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +2

Query: 689 AGSGLALPLTLLKSMGDGNHSPSGGLYARL 778
           AGS LA  L LL  M      PSG  YARL
Sbjct: 63  AGSDLASSLRLLADMQAAGLRPSGAAYARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,146,083
Number of Sequences: 37544
Number of extensions: 372576
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)