Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0405
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    29   4.7  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    29   4.7  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   6.2  

>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 780 GRRAYSPPDGEWLPSPMDFSNV 715
           GR   +P  GEW P+P D S+V
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSV 345


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 780 GRRAYSPPDGEWLPSPMDFSNV 715
           GR   +P  GEW P+P D S+V
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSV 345


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 780 GRRAYSPPDGEWLP-SPMDFSNVKGRA 703
           G + Y+P  GEW+  SP+D   + GRA
Sbjct: 855 GTQVYNPERGEWMELSPLDVMQMIGRA 881


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,313
Number of Sequences: 28952
Number of extensions: 323417
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)