Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0404
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    29   0.75 
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   5.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.3  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +3

Query: 576 NIISLSKESFK*HRCPQCFPERYDMSFFKRGLWRVLSGRQRLGSALSIAEVHGRR 740
           +++SLS+ SF+  +  +  PE++ +       + V S R + GS+ S ++ +GR+
Sbjct: 51  SLLSLSQRSFQSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGRK 105


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 578 IYYPSFFNTNCLYLTNHTINP 516
           +Y PS+ NTN LY  ++  NP
Sbjct: 133 LYSPSYNNTNLLYNFSYNANP 153


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/62 (19%), Positives = 29/62 (46%)
 Frame = +3

Query: 402 GFIRKTRDCLLKYFRIYVNNL*LRCSQTKLYYFMTSRLRIYCMVRKIKAVRIEKGRVVNI 581
           G+  ++     ++F+I +NNL        + Y     +  +C V K+K +   +  ++ +
Sbjct: 487 GYFSESTVVASQFFQIIMNNLVNALQVDTVQYAAMKAIERFCSVGKVKPILSLQPMILEV 546

Query: 582 IS 587
           +S
Sbjct: 547 LS 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,024
Number of Sequences: 5004
Number of extensions: 62939
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)