Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0404
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    28   8.7  
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    28   8.7  

>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 163 IFFEKNLGSLLKLQQCNVRCK*LRKLLMIE*NNVLRLCRTHYFLQK 26
           IFF+KN+  ++KLQ    +        + +  N+   C THY  +K
Sbjct: 249 IFFDKNISKMVKLQLTLGKWFIALYRFLFQMTNIFENCSTHYSFEK 294


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 234 FRSLFNPNKQIFPLYNISID*CR*IVLRKTETNIVFGKKINCSLFA 371
           F +LFN   Q+ P     I+    +V R TE +++FGKK N   FA
Sbjct: 51  FVALFNDVTQV-PAKGADIEGVHYVVPR-TEESLIFGKKENTGFFA 94


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 234 FRSLFNPNKQIFPLYNISID*CR*IVLRKTETNIVFGKKINCSLFA 371
           F +LFN   Q+ P     I+    +V R TE +++FGKK N   FA
Sbjct: 51  FVALFNDVTQV-PAKGADIEGVHYVVPR-TEESLIFGKKENTGFFA 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,882
Number of Sequences: 27780
Number of extensions: 341915
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)