Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0403
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 223 2e-59
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 53 5e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.42
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.73
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.7
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.2
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.2
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.9
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 27 3.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.2
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 26 5.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.2
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 223 bits (546), Expect = 2e-59
Identities = 103/173 (59%), Positives = 135/173 (78%)
Frame = +1
Query: 142 MFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNV 321
+F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP ++GNV
Sbjct: 25 LFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNV 84
Query: 322 GFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK 501
GFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTK
Sbjct: 85 GFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTK 144
Query: 502 ISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIF 660
I++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +F
Sbjct: 145 ITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVF 197
Score = 34.7 bits (76), Expect = 0.015
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PEILD+ EDL + + A+SL YPTI
Sbjct: 197 FSPEILDVSEEDLIGHLLSAASIITAISLGANYPTI 232
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 52.8 bits (121), Expect = 5e-08
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Frame = +1
Query: 142 MFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPH 306
M+I N+ + +++IR +GS I MGK +M KA+ ++H +N L KLL
Sbjct: 40 MWIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL-- 96
Query: 307 IKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTS 471
G VG +FT EV E+ VQ AR GA+AP + VIPA G P +
Sbjct: 97 -HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDD 154
Query: 472 FF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI--SPFSY 618
+ L +PT + G + ++ D + G ++ + + LL + I + F
Sbjct: 155 ILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKV 214
Query: 619 GLV 627
GL+
Sbjct: 215 GLL 217
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.42
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 221 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 328
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 118 PTLGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEK 294
P+L VP+ + + NV S ++ R+S R S+ K+ ++A D ++ + E+
Sbjct: 271 PSLESVPQKRLNASSNVSSNPAKKTRVSPRRSTAASKKKSPSSKRASSDEIEKDKEEEE 329
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 527 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 402
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.7
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Frame = +2
Query: 137 PKCSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C----AKPSKTTWTTIQP-SRNCC 301
P SS P+T S SV PV+ + T C + P +T T P + C
Sbjct: 414 PPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473
Query: 302 HTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPAS 454
TS + + +P ++ + TNC T + + P+ + +TP +
Sbjct: 474 TTSTSIPYTSTPVTSTPLTTTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 523
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 257 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 436
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 437 PTTPAS 454
+TP +
Sbjct: 577 SSTPVT 582
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 287 RAGLLSRWSLMALRIIVFFPMSTILEPR 204
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 365 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 240
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 534 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 412
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 80 KATWKSNYFVKIIQLLDEYPKCSSWVPI 163
K W Y + QLL+ YP S W+ +
Sbjct: 414 KPHWAKEYSLTKEQLLERYPNLSKWLSL 441
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 461 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 291
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 290 SRAGL 276
S L
Sbjct: 195 SEEEL 199
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 139 KMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 285
K+ IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 380 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 219
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 534 IVDDFNSTL*NLGRDRKSL 478
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,085
Number of Sequences: 5004
Number of extensions: 71838
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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