Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0403
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 218 3e-57
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 218 5e-57
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 218 5e-57
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.082
06_01_0080 + 644021-645463 33 0.33
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.77
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 4.1
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 5.4
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 28 7.1
03_04_0243 + 19298293-19299117 28 7.1
11_01_0355 + 2679561-2680985,2681183-2682295 28 9.4
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 9.4
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 9.4
02_03_0134 - 15596379-15597689 28 9.4
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 218 bits (533), Expect = 3e-57
Identities = 106/181 (58%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Frame = +1
Query: 124 LGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 297
L K+ I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLEL 81
Query: 298 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 477
+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFF
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFF 141
Query: 478 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 657
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 658 F 660
F
Sbjct: 202 F 202
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PE+LD+ +DL KF +GV+ A++SLAI YPTI
Sbjct: 202 FSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTI 237
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 218 bits (532), Expect = 5e-57
Identities = 106/181 (58%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Frame = +1
Query: 124 LGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 297
L K+ I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLEL 81
Query: 298 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 477
+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFF
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFF 141
Query: 478 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 657
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 658 F 660
F
Sbjct: 202 F 202
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PE+LD+ EDL KF +GV+ A++SLAI YPTI
Sbjct: 202 FSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTI 237
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 218 bits (532), Expect = 5e-57
Identities = 106/181 (58%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Frame = +1
Query: 124 LGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 297
L K+ I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLEL 81
Query: 298 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 477
+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFF
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFF 141
Query: 478 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 657
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 658 F 660
F
Sbjct: 202 F 202
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PE+LD+ EDL KF +GV+ A++SLAI YPTI
Sbjct: 202 FSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTI 237
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.082
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +1
Query: 196 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 366
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 367 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPEKTSFFQALSI 492
+L++ A P + LS I HN G PEK S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 534 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 427
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.77
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 280 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 438
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 650 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 528
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 336 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 241
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 136 PKMFIVGADNVGSQQ-MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIK 312
P M +V ++ G+ Q +Q + L G +++ R ++ L+ NP L+ + K
Sbjct: 248 PAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRK 307
Query: 313 GNVGFVFTRGDLVEVRDKLLE 375
G++ V + D +++ L+E
Sbjct: 308 GHL-LVLDKFDKLKLNHGLME 327
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 431 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 288
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 269 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 391
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -3
Query: 408 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 280
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 542 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 420
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>02_03_0134 - 15596379-15597689
Length = 436
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +2
Query: 146 SSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLA 325
S W P ARNR S+ ++R A S + +K+ ++P + T +AT
Sbjct: 114 SVWPPALTARNRSSKDMNR-TAKSSSAMQKSNLSSRPGVDKMAASSAKQ---RTQKATPG 169
Query: 326 SCSPAET-SLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTP 448
+ + +T ++ SV T K V +P Q + P+ P
Sbjct: 170 ALAGGKTQAVPSVRAPGTTTKKTMGVANSVPSIQRTSIPSRP 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,013,653
Number of Sequences: 37544
Number of extensions: 524193
Number of successful extensions: 1477
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -