Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0403
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 223 9e-59
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.15
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 3.1
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.1
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 5.5
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 5.5
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 7.2
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 28 7.2
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.5
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 28 9.5
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 9.5
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 223 bits (546), Expect = 9e-59
Identities = 104/149 (69%), Positives = 125/149 (83%)
Frame = +1
Query: 124 LGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 303
L PK+F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKLLP
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLP 62
Query: 304 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQA 483
HIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQA
Sbjct: 63 HIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQA 122
Query: 484 LSIPTKISKGTIEIINDVHILKPGDKVGA 570
L+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 123 LAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 232 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 534 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 412
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 373 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 546
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 547 KPGDK 561
PG K
Sbjct: 2129 TPGKK 2133
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +2
Query: 149 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C-AKPSKTTWTTIQPSRNCCHTSRATLA 325
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 326 SCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PTTPA 451
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 440 WAGMTTDNGAMAPGRAGAWTLFSNSL 363
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 665 VQKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEILVG 492
V +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 164 VSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAISNA 220
Query: 491 IERAWK 474
+ AWK
Sbjct: 221 FDMAWK 226
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 566 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 450
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 377 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 28.3 bits (60), Expect = 7.2
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +1
Query: 133 VPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIK 312
VP I+G ++G ++ Q L + + K AIK L N L L K
Sbjct: 130 VPSYLILGEASIGLGKLSQAEEYLAQAEWTAL-KTPGCDNAIKSRLYRNLGL---LNAAK 185
Query: 313 GNVGFVFT--RGDLVEV----RDKLLENKVQAPARPGAIAP 417
GN T D+ ++ KL+ + Q PA+P I P
Sbjct: 186 GNFSDALTLLADDVTDIWYEHLSKLVGQRTQTPAKPSGIGP 226
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -3
Query: 729 PLATPAWNLARRSSDLMSRISGAKNSSRIIYLLNNKTI*EWRDVQHVEKGGFRSSNLVTG 550
P+ A N RR +D+ + ++ ++S + + + ++ D V GF +++V
Sbjct: 98 PVKIEALN-RRRDNDITTVVNNFNDTSVVNGFNDTSVVNDFNDTSVVN--GFNDTSVVND 154
Query: 549 LQDVYIVDDFNST 511
D +V+ FN T
Sbjct: 155 FNDTSVVNGFNDT 167
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 125 LDEYPKCSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCC 301
L E P C SW+ W + V PV C ++ P +T Q +R+ C
Sbjct: 609 LCELPDCPSWLSQEWGECSVTCGVGLQSRPVRCDTQRKP--CDPDNKPDSTQQCNRSAC 665
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -1
Query: 575 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 426
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,802,987
Number of Sequences: 59808
Number of extensions: 587998
Number of successful extensions: 1552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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