Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0403
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 216 2e-56
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 216 2e-56
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 215 2e-56
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 43 3e-04
At3g50610.1 68416.m05534 hypothetical protein 29 2.6
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.6
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 3.4
At5g13260.1 68418.m01523 expressed protein 28 6.0
At1g33410.1 68414.m04136 expressed protein 28 6.0
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.9
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 7.9
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 7.9
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 216 bits (527), Expect = 2e-56
Identities = 102/176 (57%), Positives = 136/176 (77%), Gaps = 2/176 (1%)
Frame = +1
Query: 139 KMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIK 312
++ +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++
Sbjct: 26 QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQ 85
Query: 313 GNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSI 492
GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+I
Sbjct: 86 GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 145
Query: 493 PTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIF 660
PTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F
Sbjct: 146 PTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVF 201
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PE+LD+ + L KF +G++ +L+LA+ YPT+
Sbjct: 201 FSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTL 236
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 216 bits (527), Expect = 2e-56
Identities = 102/176 (57%), Positives = 136/176 (77%), Gaps = 2/176 (1%)
Frame = +1
Query: 139 KMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIK 312
++ +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++
Sbjct: 26 QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQ 85
Query: 313 GNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSI 492
GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+I
Sbjct: 86 GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 145
Query: 493 PTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIF 660
PTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F
Sbjct: 146 PTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVF 201
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F+PE+LD+ + L KF +G++ +L+LA+ YPT+
Sbjct: 201 FSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTL 236
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 215 bits (526), Expect = 2e-56
Identities = 103/181 (56%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Frame = +1
Query: 124 LGRVPKMFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 297
L ++ +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N A L
Sbjct: 22 LNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSL 81
Query: 298 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 477
LP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFF
Sbjct: 82 LPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFF 141
Query: 478 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 657
Q L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSV 201
Query: 658 F 660
F
Sbjct: 202 F 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 659 FAPEILDIKSEDLRAKFQAGVANGAALSLAIGYPTI 766
F PE+L++ +DL KF AGV+ ALSLAI YPT+
Sbjct: 202 FNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTV 237
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 42.7 bits (96), Expect = 3e-04
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Frame = +1
Query: 142 MFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PALEKLLPHIKG 315
+++ +N+ + + ++ R R + +G N +M+ A+ ++ + K+ ++G
Sbjct: 40 VYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRG 99
Query: 316 NVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKTSFFQALSI 492
+ G + T EV + +R G+IA +V + E + L +
Sbjct: 100 DTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEM 159
Query: 493 PTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 624
P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 160 PVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 262 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 438
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 439 HNTGLGPEK 465
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 274 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 372
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -1
Query: 587 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 408
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 407 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 273
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 223 ARYWSHVARYGSAASVASPRYRH 155
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 173 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 301
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 425 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 312
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 284 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 388
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 441 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 295
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,925
Number of Sequences: 28952
Number of extensions: 399443
Number of successful extensions: 1166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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