Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0402
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 83   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 175
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 83   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 175
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 289 RQSGPGDRGPR 321
           R  GPG +GPR
Sbjct: 56  RNPGPGSKGPR 66


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 327 AEPRTSIAGPALTMPSR---MFLPIFSIFLKIFHL 232
           AE R S    +   P R   +FL + S+F++IF+L
Sbjct: 248 AEGRLSSDNMSKKSPVRKATLFLNMASVFMRIFNL 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,906
Number of Sequences: 438
Number of extensions: 2520
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)