Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0401
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   4.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   9.3  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   9.3  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 438 SWIYL-LLSPTGHIRSDRYVFRFQTIIPIL 524
           S+ YL L +P  H   D   FR+QTI P++
Sbjct: 271 SFAYLSLFNPNKHDLVDNPTFRWQTIYPLI 300


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  ETGYCIKCYQCNSEQDKNCG 138
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 193  NFNTLYLRNILPGEVLNSVTGAPIY 267
            NFN L + N L G   N +T  P++
Sbjct: 1929 NFNYLQIVNTLAGRTYNDLTQYPVF 1953


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 399 DLRAVSDRGVVGELDNSAGVLGIVGVDIQASTDNSSALHDDLVPV 265
           D+  V   G VG+++++A V  +     +   +N  ++H  LVPV
Sbjct: 141 DVCIVELGGTVGDIESAAFVEAMRQFQFRVGHENFVSIHVSLVPV 185


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = -1

Query: 342 VLGIVGVDIQASTDNSSALHDDLVPVYRSS------RNAVQDFARQN 220
           +L + G+D      N    HDDL  V  SS       N  QD+A ++
Sbjct: 8   LLALAGIDDSDVASNRKRAHDDLDDVLSSSSDEDNNENVGQDYAEES 54


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 228 WRSLEQRYGSSYILAQDRHEERNCCPY 308
           W S+ Q  G  +  A+   EERN C +
Sbjct: 145 WNSIFQPNGHKHTYAEMTDEERNSCSH 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,480
Number of Sequences: 5004
Number of extensions: 40284
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)