Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0401
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    29   2.3  
04_01_0314 - 4243928-4244361,4245178-4245415                           29   2.3  
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496...    29   2.3  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    29   3.1  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     29   3.1  
11_03_0225 - 11902044-11902529                                         28   4.1  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    28   4.1  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    27   9.4  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    27   9.4  

>09_04_0727 +
           19765175-19765384,19765523-19765595,19766476-19766570,
           19766666-19768450,19768533-19768721,19768816-19768958,
           19769075-19769320,19769975-19770059,19770117-19770191,
           19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 306 TDNSSALHDDLV-PVYRSSRNAVQD 235
           TD+SS   DDL+ P YRSS+N V D
Sbjct: 115 TDSSSMEDDDLMRPRYRSSKNKVDD 139


>04_01_0314 - 4243928-4244361,4245178-4245415
          Length = 223

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 47  HSPSLFY*RYSKQAIASSATNVTVNRIRTAGTRSRAPNPH*NATPRIRLTSIRS---TCA 217
           H PSLF   ++   +A       +    T  TR     PH +A+PRI  TS ++      
Sbjct: 11  HPPSLFS-LFTACTVAKPTAKSALEATATMYTRDSPAPPHSSASPRIEETSWKAEQQASG 69

Query: 218 TFCL 229
            FCL
Sbjct: 70  RFCL 73


>01_06_0270 +
           28048449-28048577,28048915-28048978,28049537-28049638,
           28049971-28050021,28050075-28050172,28050395-28050485,
           28050718-28050782,28050913-28051107,28051207-28051326,
           28051592-28051662,28051787-28052012,28052330-28052407,
           28052507-28052735,28052958-28053097,28053571-28053699
          Length = 595

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 518 RNYCLKTKHVAIRANVASGREKQIDPAPLQLSLLH-SAQDLT 396
           R   L  K +A     A+G +KQI P P+ LS+   +  DLT
Sbjct: 62  RGSALVRKEIADETERATGHKKQISPVPIYLSIYSPNVVDLT 103


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 133 SSYPVHCYIGST*CNSLFRIALVEQRRRMLHFLP 32
           + + ++CYIGS+  +   +  +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 346 CRVVELAYNTAIADSAKVKSCAECNKDNCNGAGSICFSLPLATFALIA 489
           CR +EL +N A+       + A+C +  C+ A S+    P  + AL+A
Sbjct: 105 CRALELCFNVALNRLPATNAMADCGR-ACSPASSLVPPDPTLSNALVA 151


>11_03_0225 - 11902044-11902529
          Length = 161

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 181 QDSINFNTL--YLRNILPGEVLNSVTGAPIYWHKIVMKSGTVVRTCL 315
           Q S+  NTL   +++++ G +    T  PIY+  +V  S   VRT L
Sbjct: 74  QSSVLVNTLTGMIKSVVDGSIDEEKTKGPIYFPNLVFPSYKTVRTKL 120


>01_01_0623 +
           4672581-4673413,4674274-4674389,4674694-4674902,
           4675953-4676072,4676185-4676313,4676394-4676442,
           4676899-4676970,4677574-4677707,4677798-4677915,
           4678332-4678541,4678630-4678942,4679539-4679632,
           4679854-4679962,4680243-4680514,4680597-4680724,
           4680832-4681066,4681570-4681758,4681845-4682128,
           4682218-4682398,4682486-4682728,4682904-4682986,
           4683119-4683227,4687996-4688091,4688675-4688764,
           4688881-4689129,4689233-4689412,4690179-4690250,
           4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +1

Query: 130 NCGD---PFKSAKPPLECNTQDSINFNTLYLRNILPGEVLNSVTGAPIYWHKI----VMK 288
           NC D   P +   PP +CN   S++F TL +  +   ++   V G  I++++     V  
Sbjct: 526 NCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHT 584

Query: 289 SGTVVRTCL 315
           SGT+  T L
Sbjct: 585 SGTISATGL 593


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 95   SSATNVTVNRIRTAGTRSRAPNPH*NATPRIRLTSIRST 211
            +S+TN +++ ++T+G  S  P P  N        SI ST
Sbjct: 1039 NSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISST 1077


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 239 KTSPGRMLRR*---SVLKLIESWVLHSNGGLAL 150
           K SPG ML +    + L L+  W L S+GG++L
Sbjct: 254 KASPGAMLPKPQADAALALLAEWFLESSGGVSL 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,403
Number of Sequences: 37544
Number of extensions: 275174
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)