Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0401
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              28   4.1  
SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)                      28   5.4  
SB_13834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        27   7.2  

>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 151 SAKPPLECNTQDSINFNTLYLRNILPGEVLNSVTGAPIYW 270
           S  PP   NT+  I +  +Y   +  G V NS++G   YW
Sbjct: 437 STPPPTTNNTE--ITYAWVYGAFVASGVVANSISGVAFYW 474


>SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)
          Length = 557

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 189 D*LQYALPAQHSAWRSLEQRYGSSYILAQDRHEERNCCPYLLGCQPQRFPAHLPSCRARL 368
           D L+  L A   +W  ++    SSY+ +++   E+N C     C  +   A L +C   +
Sbjct: 159 DKLRKVLSALKGSWDYIDPLCLSSYVRSEENKREKNLCRNRDFCLFKSGSADLSNCGVHV 218

Query: 369 Q 371
           Q
Sbjct: 219 Q 219


>SB_13834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 139 DPFKSAKPPLECNTQDSINFNTLYL 213
           DPF   +P   C +QD +N  T YL
Sbjct: 63  DPFPGKQPESLCESQDELNTFTFYL 87


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 297  SSALHDDLVPVYRSSRNAVQDFARQNVAQVERIE 196
            + AL DD   + +S   A+++ +R NVA VE +E
Sbjct: 1478 TEALEDDKQRLKKSQLEAMEEKSRLNVAMVESVE 1511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,549
Number of Sequences: 59808
Number of extensions: 329920
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)