Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0399
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    28   1.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   4.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   8.1  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 591 LKNVIGVQKYKNIFGYVNK*ILFSIYVRVLFSFRFREWSCYICTLCIISNYNQPLNT 421
           L N +   +  NIFG+  K   F+  V  L   R R  +C++ +L   ++ +Q +NT
Sbjct: 230 LSNDLTRSQTTNIFGFAEKASSFAAAVHKLNEARIRNQACHVWSL--FASVSQMVNT 284


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -3

Query: 507 VLFSFRFREWSCYICTLCI---ISNYNQPLNTHTYNFLAF 397
           +L++ ++R+ SC +  L +   +  Y+ P++ HT N+LAF
Sbjct: 20  ILYNRKYRK-SCALAFLTLRYTLLCYSIPIHIHTVNYLAF 58


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 253  CCLLNPQNADLQKINQIFIKKLNSRKML 336
            C +LN QN+DL++  Q F    NS  +L
Sbjct: 960  CAVLNNQNSDLEEKKQAFQMVKNSYLLL 987


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 259 DNIQVIPCGKKTCKLVVNTNTTVIFK 182
           +NI V+P G    + +V TNT+++++
Sbjct: 139 ENINVVPNGDFLNRKIVRTNTSLLYR 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,467
Number of Sequences: 5004
Number of extensions: 61389
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)