Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0399
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)               29   4.9  
SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)                    28   8.6  

>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
          Length = 1275

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 536 NEYCFPFTSGFCSRLGFENGLV 471
           +E C P+TSG C+R G E+ +V
Sbjct: 292 SEACHPYTSGRCARHGDESSIV 313


>SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)
          Length = 328

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 YCPFRQTKHMPPPNGEWLPSPMGLQQ 697
           Y P   T     PNGEWLP P G+Q+
Sbjct: 160 YAPEGTTPDKVYPNGEWLP-PTGVQR 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,385,816
Number of Sequences: 59808
Number of extensions: 437986
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)