Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0399
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protei...    28   5.8  
U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of a...    28   7.6  
U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of a...    28   7.6  

>Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical
           protein T13F2.4 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 403 EKIVGMCIQRLIII*NNAKCTDVTRPFSKPKR 498
           +KI  MC+Q++  I NN+K    T+  +KPK+
Sbjct: 21  QKISMMCVQKVEKISNNSKIKKTTKRDAKPKK 52


>U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protein
           172, isoform a protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 474 CYICTLCIISNYNQPLNTHTYNFLAFC 394
           C +  L +I NY Q L TH  N + FC
Sbjct: 32  CSVVMLPLIYNYVQTLQTHMLNEMDFC 58


>U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform a protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 205 YLQPVCMS-SYHRE*LGCCLLNPQNADL 285
           ++ P+C+S S H E +GCC +     D+
Sbjct: 245 FMDPICISRSCHNEDVGCCTIPKSTGDV 272


>U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform b protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 205 YLQPVCMS-SYHRE*LGCCLLNPQNADL 285
           ++ P+C+S S H E +GCC +     D+
Sbjct: 344 FMDPICISRSCHNEDVGCCTIPKSTGDV 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,405
Number of Sequences: 27780
Number of extensions: 347300
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)