Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0399
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 546 NQKYSCIFVHQ-LHSLKLRSVYYECFI 623
           + KY  + + + L + +LR+ YY+CFI
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 546 NQKYSCIFVHQ-LHSLKLRSVYYECFI 623
           + KY  + + + L + +LR+ YY+CFI
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFI 50


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 SYFMFIYFFKLNY 152
           +YFMF+ FF ++Y
Sbjct: 473 AYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 SYFMFIYFFKLNY 152
           +YFMF+ FF ++Y
Sbjct: 459 AYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 SYFMFIYFFKLNY 152
           +YFMF+ FF ++Y
Sbjct: 493 AYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 SYFMFIYFFKLNY 152
           +YFMF+ FF ++Y
Sbjct: 442 AYFMFLTFFFIHY 454


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 274 NADLQKINQIFIKKLNSRKM 333
           N D +K+NQ+ I+  NS+++
Sbjct: 69  NQDTEKLNQLEIESDNSKEV 88


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 708 CPWHC*SPMGDGNHSP 661
           CP HC   +G    SP
Sbjct: 347 CPLHCKPELGQSQSSP 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,373
Number of Sequences: 438
Number of extensions: 4950
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)