Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0399
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    31   0.76 
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    29   3.1  
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   7.1  
At1g67810.1 68414.m07740 Fe-S metabolism associated domain-conta...    28   7.1  

>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   NFNKRGICCLIVQSYFCSLINLLTCIVGNRHNWP 103
           ++NK  + C +  S F S+++LL+C+  + + WP
Sbjct: 59  SYNKLVLICCVSLSVFYSVLSLLSCLHWHTNGWP 92


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 626 PFRQTKHMPPPNGEWLPSPMG 688
           P RQ  HMPPP+  W P P G
Sbjct: 369 PTRQMDHMPPPHQSWGP-PQG 388


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 576 QLHSLKLRSVYYECFIALLGR 638
           ++H +K R+++Y C I LLGR
Sbjct: 454 EVHGIKPRAMHYACMIELLGR 474


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +1

Query: 307 IKKLNSR--KMLIVVNIQK*DKVLIKFYEKRTEREKIV--GMCIQRLIII*NNAKCTDVT 474
           ++KL     K+  + N Q  DK  +   EK  E + I+   +C+++L++  +N K  D +
Sbjct: 582 VRKLQDENSKLTELCNHQSDDKDALT--EKLRELDNILRKNVCLEKLLLE-SNTKL-DGS 637

Query: 475 RPFSKPKREQNPDVNGKQYSFVNVTKNIL 561
           R  +K  +E+   + G++Y F+    N+L
Sbjct: 638 REKTKDLQERCESLRGEKYEFIAERANLL 666


>At1g67810.1 68414.m07740 Fe-S metabolism associated
           domain-containing protein contains Pfam PF02657: Fe-S
           metabolism associated domain
          Length = 258

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 382 YEKRTEREKIVGMCIQRLIII*NNAKCTDVTRPFSKPKREQNPDVNGKQYSFVNVTKNIL 561
           ++  ++ E   G C   LI I + AK  +V    S+   E N  V+GK+ S VN   N+L
Sbjct: 140 FKADSDSEISKGFC-SCLIWILDGAKPEEVMGVRSEDLSEMNVGVHGKEQSRVNTWHNVL 198

Query: 562 V 564
           +
Sbjct: 199 M 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,698
Number of Sequences: 28952
Number of extensions: 301002
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)