Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   2.7  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   2.7  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   6.1  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   6.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.1  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 104 KIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEI 244
           K  E  R++ ++  + A  + +    + EP+  +N++V++EKKE +I
Sbjct: 399 KETEVERKEENEAEAEAVFDDWEAA-LEEPEVAENNEVVTEKKETDI 444


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 268 HRHMHSRRYSDGVRHSGYRLHTGS 339
           H H H   Y  G  + GY  H+GS
Sbjct: 742 HHHHHHHHYITGHVYGGYHKHSGS 765


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 295 SDGVRHSGYRLHTGSTKESEG-VLADWQLPVQRP 393
           SDG+     RL     +   G +LADWQ PV  P
Sbjct: 423 SDGIEQQYERLKNKKRRRINGDLLADWQPPVFHP 456


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 608 GTFPQKLHDDKLFKY*RQRRSFHTKKKSKPIDYRFINR 495
           G F     DD+       R +FH K K++P ++R +++
Sbjct: 268 GNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIVSQ 305


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 262 FRHRHMHSRRYSDGVRHS 315
           FRH+  HSR  SD   HS
Sbjct: 359 FRHKSKHSRNSSDASEHS 376


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 HSGYRLHTGSTKESEGVLADWQLPVQRP 393
           + GY +      E+E  LA+WQ P Q P
Sbjct: 240 YDGYNITRDYIVEAERELANWQNPFQTP 267


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 652 ISNSMY*TR*VPNKMALSHKNFTTTNFLN 566
           IS+S+  +  +PN +  S  NF+ ++FLN
Sbjct: 441 ISSSVSPSNVIPNSLTSSVSNFSVSSFLN 469


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 101 KVRSPSGAAGRTT*RHTCSTRWLCTGTYARGTP 3
           K+R+P+G    TT   T ST    T    R TP
Sbjct: 133 KIRAPAGNHSSTTANRTTSTPTTTTARTTRTTP 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,879
Number of Sequences: 5004
Number of extensions: 59137
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)