Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831...    30   1.6  
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975...    30   2.1  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    29   3.7  
05_02_0049 - 6083364-6084111,6084140-6084246                           29   3.7  
06_01_0670 - 4896847-4897470                                           29   4.8  
05_02_0122 - 6840840-6841307                                           29   4.8  
10_08_0651 - 19594149-19594507,19595165-19595219                       28   6.4  
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189     28   8.5  
05_06_0059 - 25264704-25266032                                         28   8.5  

>07_03_0153 -
           14481421-14481506,14481933-14482111,14483046-14483130,
           14483301-14483499,14484222-14484292,14484380-14484486,
           14484571-14484703,14484870-14485020,14485147-14485249,
           14485330-14485438,14485587-14485746,14486293-14486394,
           14486892-14487009,14487596-14487750,14487850-14487948,
           14488078-14488167
          Length = 648

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 587 EVFVGKCHFIWNLSGLIHRI 646
           EV  G+C  +WN+ G++HRI
Sbjct: 373 EVETGRCIKVWNVGGVVHRI 392


>02_02_0491 -
           10896463-10897172,10897246-10897353,10897457-10897558,
           10897674-10897772,10898995-10899093,10900622-10900943
          Length = 479

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 153 AGEPSSSVSRRLLSFILQGSQSVGCCRSHNLTA 55
           A   SSS S  L   +L  + S GCCR+H  TA
Sbjct: 19  AAAASSSSSSFLPCLLLAAALSAGCCRAHAATA 51


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 177 KPEKSSTVAGEPSSSVSRRLLSFILQG 97
           K   S+T++GE +S VS R LS +LQG
Sbjct: 456 KSVTSNTISGELNSVVSSRTLSLLLQG 482


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 57  PSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWNSSPAYMS-TSQIRLTTTTLSAKRK 233
           P++ +TCST RTA        A+ ++ +K   L  +SSP   S T  I+LT T  +  +K
Sbjct: 73  PAARSTCSTARTA-------PASPSRPSKLTALNLSSSPTSPSLTDSIQLTVTAKNPNKK 125


>06_01_0670 - 4896847-4897470
          Length = 207

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 11  PAHKFPYTASVYYTCAVKLCDLQHPTDCEPCKIKERSRRDTDDEGSPAT 157
           P+ K  YTA  + +C V  CD+    D     ++E    D DDE S  T
Sbjct: 98  PSPKETYTAYFHDSCCVGCCDMDDDDDDGEEVLEE--EEDDDDEPSETT 144


>05_02_0122 - 6840840-6841307
          Length = 155

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = +3

Query: 3   WRTPRISS-----RTQPACTT-RVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWN 164
           WRT   +S     RT PA    R  S+ A   T   A  +R    AAA   T AP ++W 
Sbjct: 4   WRTAASASATARWRTAPAAVRWRTVSAAARWRTAAAAAQSRTAASAAARWRTAAPVVRWR 63

Query: 165 SSPA 176
           ++ A
Sbjct: 64  TAAA 67


>10_08_0651 - 19594149-19594507,19595165-19595219
          Length = 137

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 394 RAAVQGAASPRVRLRIPSSSQYEGDSRYDAHHQNNAGYAYADGEITLRNTYL 239
           +AA    A PR  + I S+S  +GD   D      A Y   DG     N+++
Sbjct: 78  QAAAPAKAPPRGFIYIDSNSDDDGDGHSDGDGGRAANYTRGDGRNGRANSWI 129


>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
          Length = 269

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  PDGLRTLQDKGKEPPRHRRRRLPSYSGT 165
           P  L +   K  +PPRHRRRR+ + S +
Sbjct: 14  PSSLLSPVSKPLKPPRHRRRRVQTLSSS 41


>05_06_0059 - 25264704-25266032
          Length = 442

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 146 SPATVELFSGLYVNEPDSLDNDDVISEKKEDEICI 250
           SP++ E   G Y  + D  D DD  S KK D  C+
Sbjct: 298 SPSSDEPSLGNYSGDDDDDDGDDGESSKKPDTTCL 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,636,430
Number of Sequences: 37544
Number of extensions: 387185
Number of successful extensions: 1178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)