Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               31   1.2  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   1.2  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_15286| Best HMM Match : I-set (HMM E-Value=0.72)                    29   2.8  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  29   2.8  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)                     28   6.5  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  28   6.5  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 9   TPRISSRTQPACTTRVPSSCATCSTRRTANLAR*RKGAAATQ---TTKAPQLQWNSSPAY 179
           TP  +  T P  TT+  +S  T +   T  L+  +  A  +Q   TT+A + Q   +   
Sbjct: 404 TPTTTKATTPT-TTKATASTQTAAEANTF-LSTQKTDATTSQSTSTTEATKSQTTKATTT 461

Query: 180 MSTSQIRLTTTTLSAKRKRT 239
           +STS  + TTT+ ++  K T
Sbjct: 462 LSTSTTKATTTSSTSTTKAT 481


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 77  QHPTDCEPCKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDE 241
           + P + E  ++ + ++RDT+D G+    E      +NE    ++DDVI E+ E E
Sbjct: 66  KRPRNEEEERVVDVTKRDTEDLGTVKCEEQEEVQIMNEVGEEEDDDVIFEEAEKE 120


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 30  TQPACTTRVPSSCATCSTRRTANLAR*RKGAAAT---QTTKAPQLQWNSSPAYMSTSQIR 200
           T P  T+  P   +T S+++T+          +T   QTT +P  Q ++SP   +TS  +
Sbjct: 663 TSPQQTSTSPQETSTSSSKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSPSQ 722

Query: 201 LTTT 212
            TT+
Sbjct: 723 QTTS 726


>SB_15286| Best HMM Match : I-set (HMM E-Value=0.72)
          Length = 187

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 74  LQHPTDCEPCKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDE 241
           L+ P +  P KI+    R T         +   GL+ N  D  DNDD  ++K ED+
Sbjct: 77  LECPAEGYPLKIQWS--RKTGPSTETMLKDTDGGLFNNNDDENDNDDSYNDKDEDD 130


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 132 QTTKAPQLQWNSSPAYMSTSQIRLTTTTLSAKRKRTRYVFRNVISP 269
           +TTK PQ Q  + P + +T+  R   T +   R       RN ++P
Sbjct: 24  RTTKTPQHQNTAKPQHRNTTTPRYHNTAIPQHRDTATQQHRNTVTP 69


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 9   TPRISSRTQ---PACTTRVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWNSSPAY 179
           TPR  S T    P+ +T    S  T S   T+  +     A +T T +A      S+P+ 
Sbjct: 25  TPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPS- 83

Query: 180 MSTSQIRLTTTT 215
            ST +   TTTT
Sbjct: 84  TSTPRTGSTTTT 95



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +3

Query: 9   TPRISSRTQPACTTRVPSSCATC-STRRTANLAR*RKGAAAT---QTTKAPQLQWNSSPA 176
           TPR  S T    TT  PS+  T  ST R  + +  R G+  T    +T  P+    ++ +
Sbjct: 41  TPRTGSTT----TTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTS 96

Query: 177 YMSTSQIRL-TTTTLSAKRKRT 239
             STS  R  +TTT SA    T
Sbjct: 97  APSTSTPRTGSTTTTSAPSTST 118


>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
          Length = 419

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +3

Query: 6   RTPRISSRTQPACTTRVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWNSSPAYMS 185
           R P  ++ T+   TT  P + +T +T  T +     +  + T T +  Q Q +  P Y+ 
Sbjct: 227 RDPVNNTDTETQSTTTTPETQSTTTTPETQSTTEIPETQSTTTTPRPSQQQRHPRPRYVL 286

Query: 186 TSQIRLTTTTLSAKRKRTRYV 248
                L     +A  K  R+V
Sbjct: 287 PPPAPLEIHNSNAADKWKRFV 307


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 410  SRC*CKGRCTGSCQSASTPSDSFVEP 333
            SRC C  R TG C     P + F +P
Sbjct: 3272 SRCVCMARWTGQCCETRLPDEMFGDP 3297


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +3

Query: 9   TPRISSRTQPACTTRVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWN-SSPAYMS 185
           TPR  S     CT   PS+ +T  T  T +        +A  T   P      S+P+  S
Sbjct: 29  TPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPSTPSTPCTPSTPSTPS 88

Query: 186 TSQIRLTTTTLSA 224
           T     T +T SA
Sbjct: 89  TPSTPSTPSTPSA 101


>SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 346 PSSSQYEGDSRYDAHHQNNAGYAYADGEITLRNTYLVLFLFADNVVVV 203
           P+  +  G + +   HQN A     DG+I  RN  + L ++  NVV+V
Sbjct: 54  PAGQRLRGRTSHFVTHQNTARVR-CDGQIGPRNARVRLSVWCCNVVIV 100


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 25  PVHSQRVLHVCRQVVRPAAPDGLRTL 102
           P  SQ  L + + V+ P A DGLRT+
Sbjct: 594 PFSSQDCLSLVQSVIEPMASDGLRTI 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,574
Number of Sequences: 59808
Number of extensions: 456746
Number of successful extensions: 1514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)