Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              33   1.0  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +3

Query: 6   RTPRISSRTQPACTTRVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWNSSPAYMS 185
           +T   S+ T       +PS+ +  +T  T+        A  T TT  PQ   +S+P   +
Sbjct: 645 QTSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSST 704

Query: 186 TSQIRLTTTTLSAKRKRT 239
           TS    TT+T+SA    T
Sbjct: 705 TS--APTTSTISAPTTST 720



 Score = 31.5 bits (68), Expect = 3.1
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = +3

Query: 12  PRISSRTQPACTTRVPSSCATCSTRRTANLAR*RKGAAATQTTKAPQLQWNSSPAYMSTS 191
           P  S+ + P  +T    + +T ST +T+ ++     +  T TT  PQ    SSP   +TS
Sbjct: 755 PTTSTTSAPITSTISAPTTSTTSTPQTSTIS-----SPTTSTTPTPQTSTTSSPTTSTTS 809

Query: 192 QIRLTTTTLSAKRKRT 239
               TT+T SA    T
Sbjct: 810 --APTTSTTSAPTTST 823



 Score = 31.5 bits (68), Expect = 3.1
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 9    TPRISSRTQPAC-TTRVPSSCATCS--TRRTANLAR*RKGAAATQTTKAPQLQWNSSPAY 179
            TP+ S+ + P   TT  P +  T S  T  T+        A  T TT  PQ   +S+P  
Sbjct: 778  TPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTS 837

Query: 180  MSTSQIRLTTTTLSAKRKRT 239
             +TS    T +T+SA    T
Sbjct: 838  STTS--APTASTISAPTTST 855


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,962,587
Number of Sequences: 237096
Number of extensions: 1973639
Number of successful extensions: 4784
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4780
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)