Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = +3

Query: 501 YKSIIDWFTF-----FFCVKRTSLPLIFKKFVVVKFLWES 605
           Y S +D + F     + C     LP  F++F   + LW S
Sbjct: 770 YDSSVDVYAFGILFWYLCAGHVRLPYTFEQFHNKELLWTS 809


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = +3

Query: 501 YKSIIDWFTF-----FFCVKRTSLPLIFKKFVVVKFLWES 605
           Y S +D + F     + C     LP  F++F   + LW S
Sbjct: 808 YDSSVDVYAFGILFWYLCAGHVRLPYTFEQFHNKELLWTS 847


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 115 KEPPRHRRRRLPSYS 159
           KE  R RRRR P Y+
Sbjct: 404 KESGRRRRRRTPRYN 418


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 GAAATQTTKAPQLQWNSSPA 176
           GAA+T     P ++ NSSP+
Sbjct: 493 GAASTAVIHEPVVETNSSPS 512


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/53 (16%), Positives = 24/53 (45%)
 Frame = -2

Query: 394 RAAVQGAASPRVRLRIPSSSQYEGDSRYDAHHQNNAGYAYADGEITLRNTYLV 236
           R   + +  P++   + ++ +Y   + Y+ ++ NN    Y +    L   Y++
Sbjct: 70  RTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/53 (16%), Positives = 24/53 (45%)
 Frame = -2

Query: 394 RAAVQGAASPRVRLRIPSSSQYEGDSRYDAHHQNNAGYAYADGEITLRNTYLV 236
           R   + +  P++   + ++ +Y   + Y+ ++ NN    Y +    L   Y++
Sbjct: 70  RTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,261
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)