Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0397
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57680.2 68414.m06546 expressed protein                             31   1.0  
At1g57680.1 68414.m06545 expressed protein                             31   1.0  
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    29   4.0  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    29   4.0  
At1g60160.1 68414.m06777 potassium transporter family protein si...    28   5.3  
At5g60350.1 68418.m07566 hypothetical protein                          28   7.1  
At5g46350.1 68418.m05705 WRKY family transcription factor contai...    28   7.1  
At3g22290.1 68416.m02816 expressed protein                             27   9.3  

>At1g57680.2 68414.m06546 expressed protein
          Length = 362

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 2   VAYPAHKFPYTASVYYTCAVKLCDLQHPTDCEPCKIKERSRRDTDDEGSPATVELFSGLY 181
           + + A  F    S++  C V +C L +    +   +  R  RDTDDE +  T E  SG  
Sbjct: 266 IIFEALSFLAFLSLFCFCVVSICLLVYFPVSDSMAL--RGLRDTDDEDTAVTEER-SGAL 322

Query: 182 VNEPDSLDNDDVIS 223
           +  P+S   D+ +S
Sbjct: 323 LLAPNSSQTDEGLS 336


>At1g57680.1 68414.m06545 expressed protein
          Length = 362

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 2   VAYPAHKFPYTASVYYTCAVKLCDLQHPTDCEPCKIKERSRRDTDDEGSPATVELFSGLY 181
           + + A  F    S++  C V +C L +    +   +  R  RDTDDE +  T E  SG  
Sbjct: 266 IIFEALSFLAFLSLFCFCVVSICLLVYFPVSDSMAL--RGLRDTDDEDTAVTEER-SGAL 322

Query: 182 VNEPDSLDNDDVIS 223
           +  P+S   D+ +S
Sbjct: 323 LLAPNSSQTDEGLS 336


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1277

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 175 AGEEFHCSWGAFVVCVAAAPFLYLARFAVRRVLQVAQLDGTRVVHAGCVRELM 17
           A E  H  W A+ +C   AP +YL  F+    +Q      T++   G + + M
Sbjct: 639 AAETLHPCWEAYRICDERAPSIYLNIFSGEATIQFP--TATQMARGGILADAM 689


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 77  QHPTDCEPCKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEIC 247
           +HP D +     E        E SP T   F  L+ +   S+++ ++   KK  E C
Sbjct: 464 RHPEDVKTTLPSENCSNGGFVESSPGTENFFRKLFRDRDRSVEDSELFGSKKYKEKC 520


>At1g60160.1 68414.m06777 potassium transporter family protein
           similar to potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 827

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 390 PLYRELPVREYAFGFLRRASMK 325
           PL+ E+  R+Y+FG LRR  MK
Sbjct: 36  PLFSEIRDRDYSFGNLRRRLMK 57


>At5g60350.1 68418.m07566 hypothetical protein
          Length = 292

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 95  EPCKIKERSRRDTDDEGSPATVELFSGLYVNEPDSLDNDDVISEKKEDEI 244
           E  KI++      D EG  +TVE      +N    L  D+ ISE++ +E+
Sbjct: 54  EQKKIEKCWMMSEDGEGGKSTVEYDGSSILNTSGVLRGDEDISEEEPEEV 103


>At5g46350.1 68418.m05705 WRKY family transcription factor contains
           similarity to WRKY-type DNA-binding protein
          Length = 326

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 131 TDDEGSPATVELFSGLYVNEPDSLDNDDV 217
           T  + +P++  +FS L +N P S  NDD+
Sbjct: 254 TASDYNPSSSPIFSDLIINTPRSFSNDDL 282


>At3g22290.1 68416.m02816 expressed protein 
          Length = 354

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 598 HKNFTTTNFLNISGND-VLFTQKKKVNQSIID 506
           HKN T T  LNI G D    T  KKV Q++ D
Sbjct: 143 HKNETETEALNILGFDQAAETMIKKVKQALAD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,024
Number of Sequences: 28952
Number of extensions: 305504
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)