Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0396
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    32   0.58 
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    29   5.4  
03_05_0436 + 24281580-24281871,24283102-24283212,24283873-242839...    28   9.4  

>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 14  LSTRIRKVSDAVNNESLNDCRNNGNQNYIEN*TRVINYTCIM--VIVTIYRRP 166
           L+ +I+ V  AV+ E L DC  N  +NY ++ T+V     I+  +I  I + P
Sbjct: 244 LAPQIKPVEPAVSPEQLRDCLRNLKKNYKDDTTKVTRAFQILLKIIANIVKNP 296


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 164 PTPQSIGDLLLLISGADFGHVTDNQTIHINKIAYIHVNVYMLHKPK*HFSQFLS 325
           P P      LLL  G  F ++ DN  +H       H +  ++H  K HF  FLS
Sbjct: 71  PPPGPPPHQLLLCIGIAFHNLLDNHLLH-------HFHTLLIHANKPHFDAFLS 117


>03_05_0436 +
           24281580-24281871,24283102-24283212,24283873-24283994,
           24284432-24284640,24284720-24284894,24285007-24285141,
           24285222-24285428
          Length = 416

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 366 IGPAVPEISEKKQTDKNCEKCYFGLC--NIYTFTWMYAILFICIV*LSVTWPKSAPDIRR 193
           +G   PE+ + K  ++ C+   FG+C   IY     Y  L    V  +V      PD+ R
Sbjct: 297 LGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQNLRPDVPR 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,715
Number of Sequences: 37544
Number of extensions: 315226
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)