Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0396
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26330.1 68414.m03211 hypothetical protein                          32   0.48 
At5g57340.2 68418.m07162 expressed protein                             28   7.8  
At5g57340.1 68418.m07163 expressed protein                             28   7.8  
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas...    28   7.8  
At3g22750.1 68416.m02869 protein kinase, putative similar to pro...    28   7.8  

>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/77 (25%), Positives = 41/77 (53%)
 Frame = +2

Query: 2   VRRILSTRIRKVSDAVNNESLNDCRNNGNQNYIEN*TRVINYTCIMVIVTIYRRPTPQSI 181
           +R+ +ST   +++  +++ES N CRN G  + I N + + +   + +  T+    +  S+
Sbjct: 608 IRKRVSTNQHRINRNLSSESKNSCRNTGEDDSIRNMSPINSSRILELQPTL----STNSV 663

Query: 182 GDLLLLISGADFGHVTD 232
            D    + G + GHVT+
Sbjct: 664 SDRTNPL-GNESGHVTE 679


>At5g57340.2 68418.m07162 expressed protein
          Length = 256

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  STRIRKVSDAVNNESLNDCRNNGNQN 94
           +T +R  SD  NN+S N+  NN N N
Sbjct: 192 TTSMRSSSDNCNNQSNNNLYNNSNNN 217


>At5g57340.1 68418.m07163 expressed protein
          Length = 238

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  STRIRKVSDAVNNESLNDCRNNGNQN 94
           +T +R  SD  NN+S N+  NN N N
Sbjct: 174 TTSMRSSSDNCNNQSNNNLYNNSNNN 199


>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
           reticulum-type (ECA2) nearly identical to SP|O23087
           Calcium-transporting ATPase 2, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1054

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  LNDCRNNGNQNYIEN*TRVINYTCIMVIVTI 154
           ++DC   G +N +   T V+N +C+ ++ +I
Sbjct: 203 MDDCELQGKENMVFAGTTVVNGSCVCIVTSI 233


>At3g22750.1 68416.m02869 protein kinase, putative similar to
           protein kinase ATMRK1 [Arabidopsis thaliana]
           gi|2351097|dbj|BAA22079
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 366 IGPAVPEISEKKQTDKNCEKCYFGLC--NIYTFTWMYAILFICIV*LSVTWPKSAPDIRR 193
           +G   PE+ + K  ++ C+   FG+C   IY     Y  L    V  +V      PDI R
Sbjct: 259 LGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPR 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,908
Number of Sequences: 28952
Number of extensions: 278015
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)