Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0395
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   5.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.1  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   8.9  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 214 VPMVRFVS*STAARFESFVYLERSQRAMYYDYITHSKLSH 333
           VP+ R+V+   A R E       SQ   Y+DY     L H
Sbjct: 33  VPLKRYVTNPGANRDEEVAAAPSSQDTPYFDYAYERSLRH 72


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 487 F*VISSSVETVRFLKYNILNKLNLSFSTLTNLGSFNKTIIV 365
           F +ISS+ E VR++  +I+  L +     T L S +K   +
Sbjct: 302 FLLISSNAEEVRYIGRSIMQNLRIGAVQNTMLASLSKAFFI 342


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 FRKINTYNSENCLNASTDGTFCFI 239
           F K   Y + N +NA TDG  C +
Sbjct: 56  FNKCQAYPNINSINALTDGAVCTV 79


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 197 FTIISVYLSELEDCMYEFRNCNVCF 123
           F   ++   E+EDC+  FR+CN  +
Sbjct: 338 FLANTLAFEEMEDCVNFFRSCNAVY 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,295
Number of Sequences: 5004
Number of extensions: 57473
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)