Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0393
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 1.3
01_01_0540 + 3957622-3960903 30 1.7
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 1.7
08_02_0707 - 20212190-20214592 30 2.3
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 30 2.3
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 29 5.2
06_02_0069 - 11126235-11127538,11128361-11128421 29 5.2
02_01_0050 - 352017-354272 29 5.2
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 6.9
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 28 6.9
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 28 6.9
12_02_0204 - 15502331-15502459,15502875-15503129 28 9.1
11_06_0198 - 21158350-21159528 28 9.1
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 28 9.1
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 28 9.1
03_01_0053 + 457622-458191,458328-458393,458734-458978,459393-45... 28 9.1
01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607 28 9.1
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 332 HKSQHESRDGGAVHGSYSLVEPD-GSVRKVDYTAD 433
H+S HE+R G + SL+EPD G+ K+ AD
Sbjct: 2684 HESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -1
Query: 265 AMSVAKRSGVDDGGSVDYRGGVDEWS----CMDNGCGIMSRGVMSRGIVCRGIMTDDALG 98
A + AKRSG+ GG+ GV S CM G+ ++ SR VC + T +
Sbjct: 408 AYTAAKRSGL--GGATMSAEGVWRASSGQLCMVACLGVGAKACHSR--VCLYLQTTFSAT 463
Query: 97 RNCRSVVVWQKTSVGGG 47
R RS+ V Q TS+GGG
Sbjct: 464 R--RSITVGQITSIGGG 478
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/97 (23%), Positives = 35/97 (36%)
Frame = -3
Query: 407 RNHQAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHERSQEKXXXXX 228
R+ + SS RHHH S G + E + RS+H + HR + + +
Sbjct: 1226 RSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHKK---HHRSSDEDATSDSNNHKH 1282
Query: 227 XXXXXXXXXX*VELHGQWVRHNEQGRNEPRHSVPGHH 117
G++ E+ RN R GHH
Sbjct: 1283 RRSRSLEESSDDAAAGEY----EKVRNGKRPHKTGHH 1315
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -3
Query: 377 YHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHE 258
+H HHH + GSC H HS GHE
Sbjct: 484 FHEEHHH--AHGGSCSHSHSHSHSHSHSHSHSHSHVHGHE 521
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 377 YHVRHHHRGSRAGSCGHQCEGQ 312
+H HHH+ ++ GSC HQ + Q
Sbjct: 169 HHHHHHHQLTKEGSCNHQQQEQ 190
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -1
Query: 235 DDGGSVDYR-GGVDEWSCMDNGCGIMSR--GVMSR--GIVCRGIMTDDALGRNCRS 83
DDGG D R GG D + M+ + SR G+ R +VCRG D G CR+
Sbjct: 509 DDGGGRDERGGGRDAVTRMNTIVDLFSRATGIWFRQIDVVCRGGAALDDAGAVCRA 564
>06_02_0069 - 11126235-11127538,11128361-11128421
Length = 454
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 257 AHGHDTY--AHPKYDYAYSVADPHTG-DHKSQHESRDGGAV 370
AHGHD A K+ Y Y+ +P G +H + H D V
Sbjct: 362 AHGHDHVHLAKKKFSYYYTFGNPEDGHEHANHHGGYDNHIV 402
>02_01_0050 - 352017-354272
Length = 751
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 130 CRGIMTDDALGRN--CRSVVVWQKTSVGGGQHGAKDE 26
CR I +A+ R CR+++ W VG GQ+ +E
Sbjct: 326 CRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 179 QWVRHNEQGRNEPRHSVPGHHDGRCS 102
Q RHNE G +E PG+H CS
Sbjct: 454 QNARHNEDGVDESSDGGPGYHVNACS 479
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 694 Y*FHHHYLHINNTFISHPSRSYQT*IDASCLVMMETM 584
Y F+H YLH + H Y T I S L +M TM
Sbjct: 171 YVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTM 207
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 410 VRNHQAQRGSSYHVRHHHRGSRAGSCGHQCE 318
V +H G +H HHH GS A + E
Sbjct: 564 VDHHHHHHGHHHHGHHHHEGSSAAAAAPDLE 594
>12_02_0204 - 15502331-15502459,15502875-15503129
Length = 127
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 375 PCTAPPSRLSCW 340
PC+ PP+RL CW
Sbjct: 54 PCSPPPARLHCW 65
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = -3
Query: 374 HVRHHHRGSRAGS---CGHQCEGQ 312
H +HHH G GS C QCE Q
Sbjct: 113 HEQHHHGGGHGGSRPDCREQCEHQ 136
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 401 HQAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHERSQ 249
++ QR +H+ H H G+ A H + + R + S E GH+RS+
Sbjct: 134 YEVQRRPPHHIIHMHEGAPAPPSAHVVDEEGRQEVS---VEDDADGHQRSK 181
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 359 GGAVHGSYSLVEPDGSVRKVDYTADDHHGFNA 454
GG + G V PDG+ + + AD HG A
Sbjct: 93 GGRIEGQGVFVGPDGATYRGAWAADRRHGVGA 124
>03_01_0053 +
457622-458191,458328-458393,458734-458978,459393-459861
Length = 449
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 559 LCFLGPWTPWSPSLLNN*HRFMFDMIVTDD 648
LC LG W PWSP L+ + +I+ DD
Sbjct: 331 LCPLG-WAPWSPRLVESVLLGCIPVIIADD 359
>01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607
Length = 302
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 347 RAGSCGHQCEGQPRSKHSRIWGEHRC 270
RAG+ HQC G+ S++ W C
Sbjct: 228 RAGAMEHQCYGRSNSRYEGRWRREAC 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,024,851
Number of Sequences: 37544
Number of extensions: 332579
Number of successful extensions: 1384
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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