Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0393
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 32 0.43
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 30 1.7
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19) 29 4.0
SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2) 29 4.0
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3) 29 5.3
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 28 7.0
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9) 28 9.3
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 28 9.3
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2) 28 9.3
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -3
Query: 443 HDGHQRCSLLYVRNHQAQRGSSYHVRHHHRGSR-AGSCGH---QCEGQPRSKHS 294
H GH + HQ + +H HHHR + S GH + G+ S HS
Sbjct: 416 HHGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHS 469
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 173 VRHNEQGRNEPRHSVPGHHDGRCSGTKLPQRGGMAED 63
+RH GR R VP HH GR P MA D
Sbjct: 1625 LRHLRHGRARHRLKVPAHHRGRHRKKATPSSTDMARD 1661
>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
Length = 613
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 332 GHQCEGQPRSKHSRIWGEHRCRGH 261
G EG RS++ +W H+CR H
Sbjct: 152 GKALEGYVRSEYGNLWETHQCRPH 175
>SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)
Length = 127
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 175 GCGIMSRGVMSRGIVCRGIMTDDALGRNCRSVVVWQKTSVGGGQHG 38
G G+M VM G++ G+M D +G V +GGG G
Sbjct: 57 GGGVMGGSVMGDGVIGGGVMDDSVMGGGVIGGSVMGDGVMGGGVMG 102
>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
Length = 181
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 398 QAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHERSQEK 243
Q RGS + HHRGS H+ GQ + +H R G+ + E Q K
Sbjct: 102 QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAK-QHHRGSGQAKQHHRESGQAK 151
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 398 QAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHER 255
Q RGS + HHRGS H+ GQ + H G + + H R
Sbjct: 82 QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAKQHHR---GSGQAKQHHR 125
>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
Length = 1058
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 395 AQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIW 285
A G+S+HV H S H Q ++H R+W
Sbjct: 360 ASHGTSWHVMARHGTSWQVMASHGTSWQVMARHGRLW 396
>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
Length = 91
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 368 RHHHRGSRAGSCGHQCEGQPRSKHSRIWGEH 276
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 12 CSPKCSSLAPCWPPPTLVF-CHTTTLRQFRPRAS--SVMMPRHTMPRLITP 155
C +++ PC PPT V CH + L RP S + + P H+ P + P
Sbjct: 204 CHSPPNTVRPCHSPPTAVHPCH-SPLTAVRPCHSPPNTVRPCHSPPNTVHP 253
>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
Length = 269
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 368 RHHHRGSRAGSCGHQCEGQPRSKHSRIWGEH 276
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 293 DYAYSVADPHTGDHKSQHESRDGGAVHG 376
D+AY DPHT HK H R G + G
Sbjct: 1425 DFAYVARDPHTSKHKC-HMFRCHGNISG 1451
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,690,490
Number of Sequences: 59808
Number of extensions: 350366
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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