Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0393
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          29   3.3  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    29   4.4  
At4g29800.1 68417.m04243 patatin-related low similarity to patat...    28   5.8  
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py...    28   5.8  
At3g06020.1 68416.m00687 expressed protein ; expression supporte...    28   7.6  
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam...    28   7.6  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   7.6  
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    28   7.6  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -3

Query: 437 GHQRCSLLYVRNHQAQRGSSYHV---RHHHRGSRAGSCGHQCEGQPRSKHSRIWGE 279
           GH      + R+H+  R   +H     HHHRG R G       G+ R  H +  GE
Sbjct: 101 GHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGHGRGRGGHVQEAGE 156


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 188 LHGQWVRHNEQGRNEPRHSVPGHHDGRCS 102
           +H     HN QGR  P  SV G H G  +
Sbjct: 835 MHNNHGMHNNQGRQNPPGSVSGRHLGNAA 863


>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
           precursor [Solanum brevidens][GI:563125]; contains
           Patatin domain PF01743
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 383 SSYHVRHHHRGSRAGSCGHQCEGQPRSKH 297
           SS +VR    GSR G+CG   +  PR+++
Sbjct: 414 SSNYVRIQANGSRLGACGPNVDTDPRAEN 442


>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 510

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 196 EWSCMDNGCGIMSRGVMSRGIV 131
           EWSC ++   +  RG++ RGIV
Sbjct: 431 EWSCSESAAHVARRGLIYRGIV 452


>At3g06020.1 68416.m00687 expressed protein ; expression supported
           by MPSS
          Length = 300

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 57  TLVFCHTTTLRQFRPRASSVMMPRHTMPRLITPL 158
           T+V+      + F PRA  + +  HT P+L TPL
Sbjct: 3   TVVYQSYFESQHFEPRALRLRLSSHTNPQLSTPL 36


>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 256 VAKRSGVDDGGSVDYRGGVDEWSCMDNGCG 167
           + K  G+D G  + Y GG D+W+ +D  CG
Sbjct: 613 MVKGFGLDIGTELRYEGGFDDWT-VDCKCG 641


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 293 DYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTADDHHGFNAVV 460
           D+   V D   G   S  +S+D    +G +  V P+ S   V   + D +GF  V+
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVL 482


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 317 GQPRSKHSRIWGEHRCRGHERSQEK 243
           GQ    H R+  E   RGH+RSQEK
Sbjct: 810 GQSLGGHKRLHYEGVLRGHKRSQEK 834


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,764
Number of Sequences: 28952
Number of extensions: 226069
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)