Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0392
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 226 NISVK*SHSINKIVMYVIS 170
           NI +K   S+NK+  YVIS
Sbjct: 411 NIHIKGVISLNKLTSYVIS 429


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = +3

Query: 135 WRIFSG----LRFFLTEITYITILFIL 203
           WR F+     L FF+   TYI IL  L
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYIIILITL 427


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 439 SPLATVKKLEKLKVENDAYEADEGL 365
           +PL  +K   K+      YEA EG+
Sbjct: 27  TPLGAIKGYYKISGNGKQYEAYEGI 51


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 439 SPLATVKKLEKLKVENDAYEADEGL 365
           +PL  +K   K+      YEA EG+
Sbjct: 27  TPLGAIKGYYKISGNGKQYEAYEGI 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,434
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)