Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0392
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62930.1 68414.m07105 pentatricopeptide (PPR) repeat-containi...    31   0.84 
At3g62280.1 68416.m06997 GDSL-motif lipase/hydrolase family prot...    29   4.5  
At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NI...    28   5.9  
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At1g62930.1 68414.m07105 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 659

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 523 VGRGLNLFFFNYMHIGTGLCEDKEVI*DSPLATVKKLEKLKVEND 389
           V RG     F Y  +  GLC+  ++  D  L+ +KK+EK K+E D
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDI--DLALSLLKKMEKGKIEAD 254


>At3g62280.1 68416.m06997 GDSL-motif lipase/hydrolase family protein
           similar to Enod8.1 [Medicago truncatula] GI:18390045;
           contains InterPro Entry IPR001087 Lipolytic enzyme,
           G-D-S-L family
          Length = 343

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 504 CFFLIICTSVLVSAKIKRLYKTH 436
           CFFL++C S+LV +  +  YK++
Sbjct: 10  CFFLVLCLSLLVCSNSETSYKSN 32


>At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NIFS)
           identical to Cysteine desulfurase, mitochondrial
           precursor  (SP:O49543)  {Arabidopsis thaliana};
           identical to cDNA GI:12656131; contains Pfam profile
           PF00266: aminotransferase, class V
          Length = 453

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 544 FVMRSLGVGRGLNLFFFNYMHIGTGLCEDKEVI*DSPLATVKKLEKLKVENDAYE-ADEG 368
           +V+R+LGV   +       +  G G    KE I  +   TVK++EKL+  +  YE   EG
Sbjct: 386 YVLRALGVDEDMA---HTSIRFGIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEG 442

Query: 367 LHI 359
           + I
Sbjct: 443 IDI 445


>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1133

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 583 FINNRFEKNCRIVFVMRSLGVGRGLNLFFFNYMHIGTGLCEDKEVI*DSPLATVKKLEKL 404
           F++N+  +   +V  M    V RG       Y  +  GLC+  ++  D  L+ +KK+EK 
Sbjct: 199 FLHNKASEAVALVDQM----VQRGCQPDLVTYGTVVNGLCKRGDI--DLALSLLKKMEKG 252

Query: 403 KVEND 389
           K+E D
Sbjct: 253 KIEAD 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,014
Number of Sequences: 28952
Number of extensions: 301880
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)