Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0390
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 423 e-119
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 422 e-119
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 422 e-119
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 161 8e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 159 4e-40
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 128 7e-31
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 34 0.019
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.045
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.14
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.32
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.55
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.73
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.7
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 3.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.0
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.9
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 27 3.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.2
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 423 bits (1041), Expect = e-119
Identities = 195/254 (76%), Positives = 222/254 (87%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
ET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDN
Sbjct: 141 YTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDN 198
Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
M+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIG
Sbjct: 199 MIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIG 258
Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
TVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++
Sbjct: 259 TVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDI 318
Query: 722 RRGYVAGDSKNNPP 763
RRG V GDSKN+PP
Sbjct: 319 RRGNVCGDSKNDPP 332
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 422 bits (1040), Expect = e-119
Identities = 194/254 (76%), Positives = 222/254 (87%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
ET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDN
Sbjct: 141 YTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDN 198
Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
M+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIG
Sbjct: 199 MIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIG 258
Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
TVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++
Sbjct: 259 TVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDI 318
Query: 722 RRGYVAGDSKNNPP 763
RRG V GDSKN+PP
Sbjct: 319 RRGNVCGDSKNDPP 332
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 422 bits (1040), Expect = e-119
Identities = 194/254 (76%), Positives = 222/254 (87%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
ET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDN
Sbjct: 141 YTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDN 198
Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
M+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIG
Sbjct: 199 MIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIG 258
Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
TVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++
Sbjct: 259 TVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDI 318
Query: 722 RRGYVAGDSKNNPP 763
RRG V GDSKN+PP
Sbjct: 319 RRGNVCGDSKNDPP 332
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 161 bits (392), Expect = 8e-41
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 4/255 (1%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
E+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL 310
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGD 358
LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G
Sbjct: 311 RALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368
Query: 359 NML--EPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIG 532
N++ + S W+K G L+ ALD ++PP +P KPLRL + DVY+
Sbjct: 369 NLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSP 416
Query: 533 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQE-AVPGDNVGFNVKNVS 709
TV GRVE G ++ ++ + VK+V + + AV GD V + ++
Sbjct: 417 RSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIE 475
Query: 710 VKELRRGYVAGDSKN 754
V +LR G + + +N
Sbjct: 476 VNQLRPGDILSNYEN 490
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 159 bits (386), Expect = 4e-40
Identities = 89/256 (34%), Positives = 146/256 (57%), Gaps = 5/256 (1%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
ET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA
Sbjct: 312 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA 371
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHG 355
T G+ L+V +NKMD +SE R++E ++S +++++ GYN V ++P+S + G
Sbjct: 372 RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG 431
Query: 356 DNMLE--PSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKI 529
N+ + S+ PW++ G L+E LD++ R + P +P+ YK
Sbjct: 432 QNVKDRVDSSVCPWYQ------------GPSLLEYLDSMTHLERKVNAPFIMPIASKYK- 478
Query: 530 GGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNV 706
+GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 479 -DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG- 536
Query: 707 SVKELRRGYVAGDSKN 754
+++ GYV +KN
Sbjct: 537 DDSDVQTGYVLTSTKN 552
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 128 bits (310), Expect = 7e-31
Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 4/249 (1%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA
Sbjct: 112 ETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLA 164
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
+GVKQ++V +NK+D EP E E+++ +S Y G+ GDN
Sbjct: 165 RQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY-----------------GFDGDN 207
Query: 362 M-LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA-ILPPARPTDKPLRLPLQDVYKIGG 535
+ + + +G + E G L+EA+D+ I P R TD P + ++DV+ I G
Sbjct: 208 TPIVSGSALCALEGREPE--IGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISG 265
Query: 536 IGTVPVGRVETGVLKPGT--IVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 709
GTV GRVE G LK G +V +++ T V +EM + L AV GDN G ++++
Sbjct: 266 RGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIK 325
Query: 710 VKELRRGYV 736
++L+RG +
Sbjct: 326 REQLKRGMI 334
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 17 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 196
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 197 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 295
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 34.3 bits (75), Expect = 0.019
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Frame = +2
Query: 383 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 562
+P K V K GK + L E + I PP + PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 563 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEA--VPGDNVGF---NVKNV 706
G +K G V+ EV+ V + + + E + VG+ N+KN+
Sbjct: 266 MEGFIKKGGKVMSVNTGRKYEVQQVGIMYPDMTEVSRLRAGQVGYIIWNMKNI 318
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 124
Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.045
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 169
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 17 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 124
++T +D PGH F G + AD VL+VA G
Sbjct: 221 FITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 124
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 26 IIDAPGHRDFIKNMITGTSQADCAVLIV 109
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.73
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 20 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 199
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 200 QLIVGVNKMD 229
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 483 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 346
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 109
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 109
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 246 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 416
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 417 RKA 425
++
Sbjct: 205 SQS 207
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 627 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSC 511
+SVV+ + +T V + + VST TGTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 721 QFLDGHVLYVETYIVSRYSFLESFV 647
+F DGH+L ETY+ LES V
Sbjct: 527 KFFDGHLLASETYVGGHVESLESGV 551
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 29 IDAPGHRDFIKNMITGTSQADCAVLIV 109
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -2
Query: 634 RLDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVYVLQGKTQGLVSGAGRWQDGIE 455
+L+F+ VG D+ + + + + DF+ ++GK L + R+++ E
Sbjct: 120 KLEFT--VGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNE 177
Query: 454 SFNEAFSVSFAFLT 413
S NE +FA+LT
Sbjct: 178 STNERVK-NFAYLT 190
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Frame = -3
Query: 585 PGFNTPVSTLPTGTVPIP-PILYTSCR--GRRRGLSVGRAGGRMASRASMRH--FPSALP 421
P +N P G+VP+P P S R R S GR S H PS LP
Sbjct: 314 PNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
Query: 420 SLRSTCHPLNQG 385
P G
Sbjct: 374 PADGVPKPTPDG 385
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 576 NTPVSTLPTGTVPIPPIL 523
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 224 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 394
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,338
Number of Sequences: 5004
Number of extensions: 77300
Number of successful extensions: 296
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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