Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0390
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 221 5e-58
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 126 3e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 105 5e-23
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 40 0.003
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.063
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 31 1.0
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.8
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 1.8
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.4
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.4
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 29 3.1
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 4.1
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 7.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 28 9.5
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 221 bits (540), Expect = 5e-58
Identities = 103/142 (72%), Positives = 119/142 (83%), Gaps = 6/142 (4%)
Frame = +2
Query: 359 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 520
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 521 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 700
YKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172
Query: 701 NVSVKELRRGYVAGDSKNNPPK 766
NVSVK+++RG VAGD KNNPPK
Sbjct: 173 NVSVKDIKRGNVAGDFKNNPPK 194
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQ 85
ET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 33 ETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 126 bits (303), Expect = 3e-29
Identities = 53/105 (50%), Positives = 78/105 (74%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA
Sbjct: 218 DTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLA 277
Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 316
T GVK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 278 KTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 105 bits (251), Expect = 5e-23
Identities = 47/76 (61%), Positives = 59/76 (77%)
Frame = +2
Query: 2 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREHA+L
Sbjct: 9 QTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILV 68
Query: 182 FTLGVKQLIVGVNKMD 229
+LGV QLIV +NK+D
Sbjct: 69 RSLGVTQLIVAINKLD 84
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +2
Query: 29 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 208
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 209 VGVNKMDSTEPPYSEPRFEEIKKEVSSYI 295
+ NK+D + ++ ++++I K V I
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 35.1 bits (77), Expect = 0.063
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 473 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 652
P R T L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 653 ALQEAVPGD 679
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 20 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 199
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 200 QLIVGVNKMD 229
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 488 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEA 655
++P + D Y + G+GTV G G+++ ++ P + ++S+
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161
Query: 656 LQEAVPGDNVGFNVK 700
++E G F++K
Sbjct: 162 VKEVRGGQTASFSLK 176
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -3
Query: 294 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 142
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 141 IPASNSPVPAAT 106
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +2
Query: 20 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 199
+ +D PGH F G D +++VAA QT+E A GV
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191
Query: 200 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 289
+I +NK+D P + P + IK ++S+
Sbjct: 192 PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 26 IIDAPGHRDFIKNMITGTSQADCAVLIV 109
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 20 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 124
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = -2
Query: 748 GVTSNIPTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRLDFSSDVGGGKDNNGTWFQHT 569
G T TT V T ++SRYS++E + H + S + TW Q
Sbjct: 86 GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145
Query: 568 SFNSADGHGTNTTDFVY 518
F++ H +N + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 729 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 553
P +T + TLSPGT + + S +A +TT+ P T PV+TLP
Sbjct: 17 PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76
Query: 552 TGTVPIP 532
+ P
Sbjct: 77 PDSTMAP 83
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 347 WHGDNMLEPSTKMPWFKGWQVERKE 421
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 14 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 124
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 230 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 370
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 403 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 293
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 608 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 763
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 101 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 277
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 278 EVSS 289
S
Sbjct: 425 RTVS 428
>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 593 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 736
VVF P NI+ + ++ A ++ +P + +KN + R GYV
Sbjct: 14 VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 639 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 514
+TD+TS+ M+ TT + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,064,131
Number of Sequences: 59808
Number of extensions: 637133
Number of successful extensions: 2280
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2273
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -