Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0390
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   514   e-148
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   504   e-145
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   489   e-141
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   336   2e-94
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    93   2e-21
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   1e-04
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  514 bits (1267), Expect = e-148
 Identities = 242/255 (94%), Positives = 246/255 (96%)
 Frame = +2

Query: 2   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
           ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA
Sbjct: 81  ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 140

Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
           FTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN
Sbjct: 141 FTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 200

Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
           MLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIG
Sbjct: 201 MLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIG 260

Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
           TVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL
Sbjct: 261 TVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320

Query: 722 RRGYVAGDSKNNPPK 766
           RRGYVAGDSKNNPPK
Sbjct: 321 RRGYVAGDSKNNPPK 335


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  504 bits (1242), Expect = e-145
 Identities = 238/251 (94%), Positives = 242/251 (96%)
 Frame = +2

Query: 2   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
           ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA
Sbjct: 24  ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 83

Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
           FTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN
Sbjct: 84  FTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 143

Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
           MLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIG
Sbjct: 144 MLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIG 203

Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
           TVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL
Sbjct: 204 TVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 263

Query: 722 RRGYVAGDSKN 754
           RRGYVAGDSKN
Sbjct: 264 RRGYVAGDSKN 274


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  489 bits (1207), Expect = e-141
 Identities = 228/255 (89%), Positives = 241/255 (94%)
 Frame = +2

Query: 2   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
           ET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLA
Sbjct: 81  ETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLA 140

Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
           FTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDN
Sbjct: 141 FTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDN 200

Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIG 541
           MLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RPTDK LRLPLQDVYKIGGIG
Sbjct: 201 MLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIG 260

Query: 542 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 721
           TVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKEL
Sbjct: 261 TVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKEL 320

Query: 722 RRGYVAGDSKNNPPK 766
           RRGYVAGDSKN PP+
Sbjct: 321 RRGYVAGDSKNQPPR 335



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 681 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 574
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  336 bits (825), Expect = 2e-94
 Identities = 157/164 (95%), Positives = 159/164 (96%)
 Frame = +2

Query: 2   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 181
           ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA
Sbjct: 8   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 67

Query: 182 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 361
           FTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN
Sbjct: 68  FTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 127

Query: 362 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 493
           MLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 128 MLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 93.5 bits (222), Expect = 2e-21
 Identities = 41/46 (89%), Positives = 44/46 (95%)
 Frame = +2

Query: 629 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPK 766
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPR 46


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +2

Query: 20  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 199
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 200 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 370
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 5   TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 106
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 5   TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 106
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 382 FG*RLQHVVSVPSRNGHESDSSWV 311
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 225 WIPLNHHTVSPDLRKSRRKY 284
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,104
Number of Sequences: 438
Number of extensions: 5058
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)