Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0386
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   2.5  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   4.3  

>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 677 IDLFGFHITTYYFHFVRLFQAW 742
           IDL   HIT YY  FV  F+ W
Sbjct: 57  IDLNSVHITKYYASFVDGFRLW 78


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = +2

Query: 272 HYE-ITKVKKVKSYLINATID 331
           HYE +TK+ + KSYLI++++D
Sbjct: 305 HYESVTKILQWKSYLISSSLD 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,792
Number of Sequences: 5004
Number of extensions: 50088
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)